Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D03
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119...    31   0.27 
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    28   1.4  
11_01_0605 + 4821363-4823246                                           27   3.3  
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233...    27   4.3  
05_05_0200 - 23171803-23171906,23172304-23173951                       26   5.7  
02_05_1268 - 35345283-35345462,35345577-35345636,35345719-353460...    26   5.7  
11_01_0470 + 3645010-3647686,3647804-3648168                           26   7.6  
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655     26   7.6  
04_04_0463 - 25397837-25399693,25402136-25402405                       26   7.6  

>01_06_1338 +
           36411536-36411646,36411738-36411791,36411898-36411974,
           36412108-36412195,36412289-36412561,36412651-36412968
          Length = 306

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 207 FTLNNGVEMPAIGLDTFKMG 266
           FTLN G  +P++GL T+K G
Sbjct: 5   FTLNTGARIPSVGLGTYKAG 24


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 220 LLSVNCCGNMY-LKSSKSSNPCRCLIC 143
           L+++N C  +Y L+S   S+P RCL+C
Sbjct: 547 LVALNRCWTVYRLRSRGISHPARCLLC 573


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 95  MILLFYVITTINHVASTYEAPARVGRL*R--FQIHIATTIHTQQWS--GNACHWIG 250
           ++LL +++  +   AST ++PAR+ +      +  +++   T+ W+   N C W G
Sbjct: 17  LLLLLFLLLGVPMAASTEQSPARLNKAHEDIMRDILSSVGSTKNWNTCSNPCQWSG 72


>01_07_0255 -
           42322111-42322308,42322658-42322750,42323127-42323344,
           42323476-42323642,42324097-42324207,42324267-42324409,
           42324492-42324710,42324975-42325055,42325202-42325381,
           42325971-42326301,42326775-42326888,42327036-42327127,
           42327631-42328059
          Length = 791

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 162 LAGASYVDATWLIVVIT*NKRIINYKKVNTELTNSPFK 49
           + G S  D T L++ +  N+R+ NYK+  + L ++  K
Sbjct: 738 IGGVSPADMTVLLIWMESNRRMANYKRQQSTLRSAATK 775


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 175 LKISNTYCHNNSHSTMEWKCLPLDWIHLKWDIFTQFVQTVDDALKAGYR 321
           L +  TYC N ++   EW  + +  + L  + F Q+       L  GYR
Sbjct: 198 LVLRKTYCKNGTYKPNEWMHMMVVVVLLNLNCFAQYALC---GLNLGYR 243


>02_05_1268 -
           35345283-35345462,35345577-35345636,35345719-35346042,
           35346266-35346349,35346784-35346872,35346959-35347073,
           35347534-35347660,35347743-35347882,35348010-35348071,
           35348769-35348838,35348947-35349066,35349155-35349232,
           35349738-35349968,35350110-35350220
          Length = 596

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 174 SLPTLAGASYVDATWLIVVIT*NKRIINYKKVNTELTN 61
           S P LAG S V+    IVV+  N R     KV+  L N
Sbjct: 171 SFPALAGHSLVNWKKYIVVVAGNTRTSTSNKVSVWLIN 208


>11_01_0470 + 3645010-3647686,3647804-3648168
          Length = 1013

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 35  IAVNNLKGEFVSSVFTFL 88
           +A NNL GE  S++FT+L
Sbjct: 246 LAYNNLSGELPSNLFTYL 263


>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
          Length = 719

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 278 CVKMSHFKCIQSNGRHFHSIVE-CELLWQ 195
           C    HF CI S+ RH +++   C  +W+
Sbjct: 91  CSHKFHFHCISSSVRHGNTVCPICRAVWK 119


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 278 CVKMSHFKCIQSNGRHFHSIVE-CELLWQYV 189
           C  M HF CI SN +H +     C   W+ +
Sbjct: 113 CSHMFHFHCISSNVKHGNYFCPICRAKWKEI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,108,797
Number of Sequences: 37544
Number of extensions: 147774
Number of successful extensions: 405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)