Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D03
         (321 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015232-1|AAH15232.2|  148|Homo sapiens transmembrane protein 1...    33   0.25 
AK128040-1|BAC87244.1|  245|Homo sapiens protein ( Homo sapiens ...    33   0.25 
BC002485-1|AAH02485.1|  387|Homo sapiens tumor suppressing subtr...    27   9.5  
AF019952-1|AAC51911.1|  387|Homo sapiens tumor suppressing STF c...    27   9.5  
AC019118-1|AAY24338.1|  300|Homo sapiens unknown protein.              27   9.5  

>BC015232-1|AAH15232.2|  148|Homo sapiens transmembrane protein 136
           protein.
          Length = 148

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 163 GWKTLKISNTYCHNNSHSTMEWKCLPLDWIH 255
           GW +L IS  +CH N H + EW C  + + H
Sbjct: 37  GWLSLYIS--FCHLNKHRSYEWSCRLVTFTH 65


>AK128040-1|BAC87244.1|  245|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46159 fis, clone TESTI4002072. ).
          Length = 245

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 163 GWKTLKISNTYCHNNSHSTMEWKCLPLDWIH 255
           GW +L IS  +CH N H + EW C  + + H
Sbjct: 15  GWLSLYIS--FCHLNKHRSYEWSCRLVTFTH 43


>BC002485-1|AAH02485.1|  387|Homo sapiens tumor suppressing
           subtransferable candidate 1 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 TCKGWKTLKISNTYCHNNSHSTM 222
           T +GW T  +S  YC  N+H  +
Sbjct: 208 TLRGWDTRSMSQIYCIENAHGQL 230


>AF019952-1|AAC51911.1|  387|Homo sapiens tumor suppressing STF cDNA
           1 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 TCKGWKTLKISNTYCHNNSHSTM 222
           T +GW T  +S  YC  N+H  +
Sbjct: 208 TLRGWDTRSMSQIYCIENAHGQL 230


>AC019118-1|AAY24338.1|  300|Homo sapiens unknown protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 TCKGWKTLKISNTYCHNNSHSTM 222
           T +GW T  +S  YC  N+H  +
Sbjct: 121 TLRGWDTRSMSQIYCIENAHGQL 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,665,388
Number of Sequences: 237096
Number of extensions: 867558
Number of successful extensions: 2144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)