Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D03
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    31   0.18 
Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical pr...    29   0.75 
AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical ...    29   0.99 
U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   1.7  
U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   3.0  
AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical ...    26   5.3  
Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 207 FTLNNGVEMPAIGLDTFKM 263
           FTL+NGV MP+IGL T++M
Sbjct: 8   FTLSNGVLMPSIGLGTWQM 26


>Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical
           protein C01H6.4 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 105 KRIINYKKVNTELT--NSPFKLLTAITD 28
           K +I YK VN ELT  +S FKLLT   D
Sbjct: 381 KNVIGYKMVNFELTTDSSDFKLLTIRVD 408


>AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical
           protein F29A7.7 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 91  IYDSFILRNYYY*PCRVNI*GTCKGWK 171
           IYDS+I+RNY   PC + I G   G++
Sbjct: 191 IYDSYIIRNY---PCNIKIDGVQCGFR 214


>U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical
           protein ZK1290.5 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 LNNGVEMPAIGLDTFKMGHFY 275
           L+N VEMP IGL T   G +Y
Sbjct: 7   LSNNVEMPLIGLGTTHSGGYY 27


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 311 AFRASSTVCTNCVKMSHFKCIQSNGRHFHSIVECE 207
           A +  + +CT C K  H KC     + ++S  +C+
Sbjct: 248 ASKNGTCLCTKCQKWVHLKCTGIRSKQWNSQFQCK 282


>U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical
           protein C07D8.6 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 213 LNNGVEMPAIGLDTFK 260
           L+NGVEMP IGL T++
Sbjct: 10  LSNGVEMPVIGLGTWQ 25


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 166  WKTLKISNTYCHNNSHSTMEWKCLPLDWIHLKWDIFTQ 279
            WKTL+I   Y    S S ++   L +D   L W  +++
Sbjct: 2797 WKTLQILKNYHPEESRSNVQLHVLSVDGSDLGWSKYSK 2834


>AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical
           protein Y39G8B.2 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 210 TLNNGVEMPAIGLDTFKM 263
           TLN+G EMP IG  T+++
Sbjct: 8   TLNSGYEMPVIGYGTWQL 25


>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 271 KCPILNVSNPMAGISTPLLSVNCCGNMYLKSSKSSNPCRCLIC*RDMVNSSNYVK*KNHK 92
           K P+L  +  +AG S  ++   CC    + +   +  C C I     + S N     N K
Sbjct: 348 KEPLLYEAIKIAGSSENVIRCKCCSQDPVVNCFDNKDCPCFIA-NQFLQSRNKTTDTNEK 406

Query: 91  LQ 86
           L+
Sbjct: 407 LK 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,343,567
Number of Sequences: 27780
Number of extensions: 144972
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)