Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D02
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569...    29   0.77 
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004...    28   1.3  
01_06_1412 - 37140654-37141088,37141549-37142214                       27   2.3  
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    25   9.4  
03_04_0045 + 16772835-16772876,16772965-16773118,16774219-167742...    25   9.4  

>12_02_0380 -
           18356210-18356329,18356415-18356673,18356754-18356917,
           18357235-18357397,18357465-18359020
          Length = 753

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 107 NVHGSVILQTILDFQRPAKAVSGXXXXXXXXXXVILCDAKGCHVA 241
           ++HG+ ++Q +++       VS            ++ DA GCHVA
Sbjct: 516 DMHGTRVVQKVIETINSPDEVSMVVCALSSGAITLMMDANGCHVA 560


>04_04_0824 - 28399144-28399385,28400193-28400312,28400422-28400453,
            28400531-28400625,28400713-28400786,28400883-28401018,
            28401096-28401333,28401508-28401555,28401593-28401780,
            28401862-28401983,28402061-28402226,28402321-28402443,
            28403068-28403139,28403244-28403351,28404212-28404328,
            28404458-28404596,28404702-28404808,28404904-28405013,
            28405141-28405274,28405348-28405497,28405571-28405791,
            28405868-28406677,28410261-28410473
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
 Frame = +2

Query: 23   QKYFPVVCLRLLPIDRVDLTQLDKDYFINVHGS-------VILQTILDFQRPAKA--VSG 175
            QK++ V    LL      L+ LD +  I+   +       +I    L   R  +    +G
Sbjct: 920  QKFYQVTMWLLLKTGLKSLSMLDWELLISFKRATGQKPQRIIFYRFLSLYRNLRGQHFAG 979

Query: 176  XXXXXXXXXXVILCDAKGCHVADALCKGQFVGV 274
                      +I+CD   CH  D + +GQF  V
Sbjct: 980  FYPCMDIFLTIIVCDFNTCHFRDGVSEGQFYQV 1012


>01_06_1412 - 37140654-37141088,37141549-37142214
          Length = 366

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 WFCYIANHFRFSASSESGVRSTGAH 189
           WFC   + F+   S    VRS GAH
Sbjct: 316 WFCACGSDFKHKRSLNDHVRSFGAH 340


>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 155 PAKAVSGXXXXXXXXXXVILCDAKGCHVADALCKGQFVGVKARDKLIW 298
           P   +SG           + C+  GC V+  L  G F G +AR    W
Sbjct: 98  PGVYISGNGTLVLVDGVALTCERPGCVVSANLSGGIFFGREARVVAGW 145


>03_04_0045 +
           16772835-16772876,16772965-16773118,16774219-16774248,
           16774752-16774882,16774960-16775034,16775315-16775482,
           16775837-16775984,16776808-16776953
          Length = 297

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 101 NNPCRVVSDPLCLSAVSGDKLQGNTSAALVHPR 3
           N P   VS P       G  L G TS A VHP+
Sbjct: 116 NQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQ 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,447,356
Number of Sequences: 37544
Number of extensions: 153882
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)