Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D02
         (316 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095941-1|BAC23117.1|  648|Homo sapiens KIAA2021 protein protein.     35   0.044
AF231404-1|AAF75636.1|  120|Homo sapiens immunoglobulin heavy ch...    28   6.6  
AJ556829-1|CAD89242.1|  113|Homo sapiens immunoglobulin heavy ch...    27   8.8  

>AB095941-1|BAC23117.1|  648|Homo sapiens KIAA2021 protein protein.
          Length = 648

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 104 INVHGSVILQTILDFQRPAKAVSGXXXXXXXXXXVILCDAKGCHVADALCKGQFVGVKAR 283
           + V GS++LQ +L F  P   +             +     G HV DA+     V  K R
Sbjct: 494 VTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLR 553

Query: 284 DKLIWRLKGYY 316
            +++  LKG Y
Sbjct: 554 RRVLQNLKGQY 564


>AF231404-1|AAF75636.1|  120|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 69  LSIGSKRRQTTGKYFCCSCSPSC 1
           L + S R + T  Y+C  CS SC
Sbjct: 81  LQMNSLRAEDTALYYCAKCSSSC 103


>AJ556829-1|CAD89242.1|  113|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 69  LSIGSKRRQTTGKYFCCSCSPS 4
           L + S R + T  Y+C  CSPS
Sbjct: 81  LQMNSLRAEDTAVYYCAKCSPS 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,796,654
Number of Sequences: 237096
Number of extensions: 835714
Number of successful extensions: 2295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)