Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D02
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear recep...    27   2.1  
AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormo...    27   2.1  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    26   5.0  

>AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 166 GVRSTGAHFGTFAGDPVRCEGLSCG*CSLQGSVRRSQSEG*THMETQRL 312
           G R+TG H+G  + D  + +  SC  C     +R+         E  R+
Sbjct: 31  GDRATGKHYGAMSCDGCKAKRNSCRKCRFDVCLRKGMRRDAVQTERDRI 79


>AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform b protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 166 GVRSTGAHFGTFAGDPVRCEGLSCG*CSLQGSVRRSQSEG*THMETQRL 312
           G R+TG H+G  + D  + +  SC  C     +R+         E  R+
Sbjct: 74  GDRATGKHYGAMSCDGCKAKRNSCRKCRFDVCLRKGMRRDAVQTERDRI 122


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 17  EQQKYFPVVCLRLLPID-RVDLTQLDKDYFINVHGSVILQTI 139
           E QKY     +  LP++ R+D    ++DY I++    IL+T+
Sbjct: 818 EYQKYTVSEKINNLPVEERIDYLTYNEDYEIDLENLEILETL 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,171,312
Number of Sequences: 27780
Number of extensions: 132518
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)