Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D02
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 215 TGSPAKVPK*APVDLTPLSLDAENL 141
           +GSP ++PK  P  LT   ++   L
Sbjct: 373 SGSPTELPKHLPTSLTKSKMEVMEL 397


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +1

Query: 109 CPWFCYIANHFRFSASSESG 168
           CPW C + N   +   S  G
Sbjct: 235 CPWICELTNDAGYVVYSALG 254


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 81  VRSTLSIGSKRRQTTGKYFC 22
           V  TL I   R + +GKY C
Sbjct: 268 VSGTLIIREARVEDSGKYLC 287


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 22  AEVFPCSLSPLTADR 66
           A + P  +SP TADR
Sbjct: 606 AVIVPPKISPFTADR 620


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 286 IPRFDSYELTLAESISHMTTLRIAQDHQ 203
           +P+  +  LT   ++S++TT   + + Q
Sbjct: 709 VPKESTQSLTTTGNVSYLTTNNTSNNSQ 736


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 75  STLSIGSKRRQTTGKYFCCSCSPS 4
           S LSI +   + +G Y C + +P+
Sbjct: 672 SLLSITNLAAEHSGDYTCVAANPA 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,817
Number of Sequences: 438
Number of extensions: 1357
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)