Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D01
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   0.49 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   1.5  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   2.6  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    24   4.6  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   4.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    23   6.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   6.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   8.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    23   8.0  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   KNVREDFVFYFRGYICRV-PRFRI*GNMGIFDRRCCVRPALSRILPR 138
           +++R   +   RGY  R  P+ R  G + IF R+C +     R+LP+
Sbjct: 173 EHLRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPK 219


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 103 CVRPALSRILPRILSWT 153
           C++P L  ++P +L+W+
Sbjct: 901 CIKPLLPELIPNLLAWS 917


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 111 ASTIPDLTQDTILDLRDLGCTRAGPTTEITD 203
           + T+P  T +TI  LR    TR  P T+  D
Sbjct: 146 SKTLPQSTNETIEKLRQFLQTRYQPATKFLD 176


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 111 PYAAPPIKYSHISLNPKPWHPTNV 40
           PY  PPI  +    NP P   T V
Sbjct: 223 PYGIPPIALTSAGGNPDPLRTTQV 246


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 168 CTRAGPTTEITDPL 209
           CT+ GPT    DPL
Sbjct: 280 CTKVGPTIRFLDPL 293


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 145 IVSWVRSGIVLAVRSTAYQI--FPYFPKS 65
           + SW  +G+++  R   Y I    Y P+S
Sbjct: 172 VTSWTENGVIMGARHKKYAIEGVQYHPES 200


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 63   KPWHPTNVAAKIK 25
            +PWHPT +  KI+
Sbjct: 2387 EPWHPTELDQKIR 2399


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 43   ICRVPRFRI*GNMGIFDRRCCVRPALSR-ILPRI 141
            IC+V RF    N  ++  +C ++  L R I P++
Sbjct: 999  ICKVIRFPGENNADVYFNKCAIKEFLERDISPQL 1032


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 151 SRIVSWVRSGIVLAV--RSTAYQIFPYF 74
           S I SW  SG VLAV   +T + IF +F
Sbjct: 818 SSIPSWQLSGAVLAVDILATMFCIFGWF 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,113
Number of Sequences: 5004
Number of extensions: 17854
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)