Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D01
(278 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0059 + 17737316-17737402,17737573-17737941 34 0.014
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528... 27 1.6
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 27 2.1
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 27 2.8
01_04_0058 + 15490220-15490545,15491786-15491849,15491950-154920... 27 2.8
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 26 3.7
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803... 26 4.9
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 26 4.9
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580 25 6.5
07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561... 25 6.5
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 25 6.5
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 25 6.5
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 25 8.6
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903... 25 8.6
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 25 8.6
06_03_1132 - 27883151-27883777 25 8.6
04_04_0068 + 22505675-22505930,22506307-22506404 25 8.6
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32... 25 8.6
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 25 8.6
>01_05_0059 + 17737316-17737402,17737573-17737941
Length = 151
Score = 34.3 bits (75), Expect = 0.014
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -2
Query: 223 CARRSRGSVISVVG--PARVQPRSLRSRIVSWVRSGIVLA-VRST--AYQIFPYFPKSET 59
C RR + +V S+ G V P+ R + +V + VL V+ST A +++PY P + T
Sbjct: 42 CERRVKNAVKSMRGVTSVAVNPKQSRCTVTGYVEASKVLERVKSTGKAAEMWPYVPYTMT 101
Query: 58 VAPYKCSRENKK 23
PY +KK
Sbjct: 102 TYPYVGGAYDKK 113
>02_01_0707 -
5276963-5278396,5280163-5280248,5280634-5281011,
5281453-5281690,5281787-5282052,5282148-5282526
Length = 926
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 142 VSWVRSGIVLAVRSTAYQIFPYFPKSETVAPYKCS-RENKKQNL 14
+ WV SG AV Y YFP TV K ENK++ +
Sbjct: 768 IMWVTSGHHAAVNFGQYHYGGYFPNRPTVMRKKMPVEENKEEEM 811
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 87 YSHISLNPKPWHP 49
+SH LN KPWHP
Sbjct: 33 WSHSYLNQKPWHP 45
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 153 LRDLGCTRAGPTTEITDPLDRRAHIPVVHSAILQSTSYCSH 275
L+ +G + GP EIT +R A+ P+ A +Q+ + H
Sbjct: 384 LQTVGYSNIGPLMEITKTTNRGANYPMQQDAQVQNQNALLH 424
>01_04_0058 +
15490220-15490545,15491786-15491849,15491950-15492055,
15492144-15492284,15492601-15492749,15493106-15493271,
15493638-15493651
Length = 321
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 132 TQDTILDLRDLGCTRAGPTTE----ITDPLDRRAHIPVVHSAILQSTSY 266
T + ++D+ D+ R GP T+ I +P+ +++ PV+H+ LQS Y
Sbjct: 36 TVEELIDIYDI--RRIGPDTKVLGVIANPV-KQSKSPVLHNTCLQSVGY 81
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 196 ISVVGPARVQPRSLRSRIVSWVRSGIVLAVRSTAYQIFPYFPKSETVAPYKCSR 35
++ +GPAR+Q RS RI G L ++ T P F + P C++
Sbjct: 108 LAKLGPARIQGRSSPKRIEG--PDGRNLQLKFTTRLSLPLFTGGKVEGPESCAK 159
>04_01_0611 -
8029101-8029205,8029985-8030107,8030191-8030556,
8030639-8031124
Length = 359
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 23 FFIFAATFVGCHGFGFREIWEYLIGG 100
F + +TFVG HG E W+ GG
Sbjct: 326 FECYWSTFVGAHGRSGSETWDGSAGG 351
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 109 RPALSRILPRILSWTSGTWAVPGRARLRKLRTP 207
R ALSRI + + TW P +RLR +R P
Sbjct: 110 RSALSRI---VADTSDVTWHSPNHSRLRDMRMP 139
>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
Length = 1101
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 227 DVRPAVQGVRNFRSRARPGTAQVPEVQDSILGKIRDSAGRTQHRLSNI 84
DV +Q V + S AR + D++LG +RDS R + ++NI
Sbjct: 2 DVAADLQRVIDILSSARMESQSRLLELDALLGAVRDSIARFPNIINNI 49
>07_01_0737 +
5614552-5616196,5617425-5617600,5617811-5617930,
5618589-5618669,5618769-5618804,5618872-5618922,
5618923-5618988,5620755-5620976,5622147-5622308,
5622321-5622491
Length = 909
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 165 GCTRAGPTTEITDPLD--RRAHIPVVHSAILQSTSYCSH 275
GC + G E+ + + RR H+ H L + CSH
Sbjct: 392 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH 430
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 244 AEWTTGMCARRSRGSVISVVGPARVQPRSLRSR 146
+ W+ RRSR ++ ++ PA ++PR R R
Sbjct: 382 SRWSFSRPPRRSRRALPAIPSPAGLRPRRRRPR 414
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 165 GCTRAGPTTEITDPLD--RRAHIPVVHSAILQSTSYCSH 275
GC + G E+ + + RR H+ H L + CSH
Sbjct: 703 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH 741
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 142 VSWVRSGIVLAVRSTAYQIFPYFPKSETVA 53
+ WV SG AV Y YFP T+A
Sbjct: 591 IIWVASGHHAAVNFGQYPYAGYFPNRPTIA 620
>12_02_0760 -
22888636-22889407,22889503-22889769,22890001-22890302,
22890402-22890512,22890990-22891568,22892026-22892087,
22892434-22892754,22893434-22893776
Length = 918
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 142 VSWVRSGIVLAVRSTAYQIFPYFPKSETVA 53
+ WV SG AV Y YFP T+A
Sbjct: 752 IIWVASGHHAAVNFGQYPYAGYFPNRPTIA 781
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 139 ILSWTSGTWAVPGRARLRKLRTPWTAGR 222
+LSWT G A+ + R R L T +GR
Sbjct: 149 VLSWTPGMAAIEQQMRKRALVTSVLSGR 176
>06_03_1132 - 27883151-27883777
Length = 208
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 220 ARRSRGSVISVVGPARVQPRSLRSRIVSWVRSG 122
A R+RG V + AR + SR+V W SG
Sbjct: 143 ASRARGDVAAAASRARGAVVAATSRLVRWEPSG 175
>04_04_0068 + 22505675-22505930,22506307-22506404
Length = 117
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = -2
Query: 163 RSLRSRIVSWVRSGIVLAVRSTAYQIFPYF 74
R ++ +V+W ++ +A+R + + + P F
Sbjct: 64 RRMKRELVAWAKAVASMAIRESCFHVSPCF 93
>03_01_0035 -
322993-323280,323385-323528,324055-324180,324827-324882,
325497-325517,327153-327420,327904-329787
Length = 928
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 212 VQGVRNFRSRARPGTAQVPEVQDSILGKIRDSAGRTQHRLSNI 84
V+ + NF ++ P ++ +DSI+GK R S ++ +S I
Sbjct: 54 VESIPNFHCKSLPTRSRKTNAEDSIVGK-RGSMYQSSSEISMI 95
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +1
Query: 97 RCC---VRPALSRILPRILSWTSGTWAVPGRAR 186
RCC + P L+ +PR+ ++ +GT AV R
Sbjct: 187 RCCQSIIPPTLNFYVPRMFNFENGTAAVDNELR 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,968
Number of Sequences: 37544
Number of extensions: 126838
Number of successful extensions: 448
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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