Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C24
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    26   3.6  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    26   4.8  
07_01_0466 - 3518315-3521428                                           26   4.8  
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    25   6.4  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    25   8.4  

>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 228 FKLTLRILLNQTQHYKVLLYTAVFESL-STYFLTS*TRLFIIIKDYI 91
           F+L  + L +     K LLYT  F SL  T F T+   LF+ + DYI
Sbjct: 225 FELVPKCLFHVFPPLKYLLYTPSFHSLHHTQFRTN-YSLFMPVYDYI 270


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 215 CAFYLIRHNIIKYYCTQPSLNLFLHISSQVERDFSL 108
           C  Y   H  +KY  TQP LNL L    ++ +D+ +
Sbjct: 588 CEIYT-DHKSLKYIFTQPDLNLRLRRWLELIKDYDV 622


>07_01_0466 - 3518315-3521428
          Length = 1037

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 218  LCAFYLIRHNIIKYYCTQPSLNLFLHISSQVER 120
            +  FY +RH + +     P++N F  + S  ER
Sbjct: 1003 VAGFYYLRHPMFRDRMPAPAINFFRRLPSMSER 1035


>04_04_1122 + 31052497-31052629,31053133-31053191,31053285-31053579,
            31054099-31054279,31054739-31054956,31055522-31055739,
            31055842-31055958,31056106-31056128,31056223-31056438,
            31056536-31056677,31056822-31057067,31057659-31057856,
            31058331-31058379,31060835-31060911,31061266-31061551,
            31061661-31061841,31062149-31062344,31062630-31062738,
            31062861-31062961,31063155-31063267,31063347-31063442,
            31063531-31063746,31063857-31063995,31064087-31064332,
            31064605-31064940
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 158  LNLFLHISSQVERDFSLLLKITLC 87
            LN  L  SS +ERD  ++L IT C
Sbjct: 942  LNCLLVCSSWLERDEEIMLDITTC 965


>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
            27014914-27014943,27018095-27019987
          Length = 1485

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 118  SRSTCEEICRKRFKDGCVQ 174
            +++ CEE+C    K GC+Q
Sbjct: 1287 NKNNCEELCSVIVKHGCLQ 1305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,991,092
Number of Sequences: 37544
Number of extensions: 71635
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)