Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C23
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    29   0.13 
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    24   4.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    24   4.7  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   4.7  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    23   6.3  

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +3

Query: 3   TRGYFNAEVYMFAEWISVCKRALSR---MLVIIVSLGFGIVKPRLGPALQR 146
           ++GY      +FA ++S+ + A       L++IVSLG+ IV P LG  L++
Sbjct: 239 SKGYTTGSK-VFAFFLSLAQSARQSYFGFLLLIVSLGYSIVVPSLGSLLRK 288


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 230 VRLVGLVAQTQPRVYSAEHPPQHARADHALQRGAQTRLDNTKTERY 93
           V+LVGL A      Y   HPP      H +Q G  T  +  + ERY
Sbjct: 238 VQLVGLSALLIACKYEEIHPPSIYNFAHVVQ-GIFTVDEIIRAERY 282


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 272 VQQRERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQHARADHALQR 135
           +QQR+  ++QQQ A +     AQ QP  +  +  P   +    +QR
Sbjct: 303 LQQRQMQMQQQQKAQQQQSPKAQ-QPPAHLVQSAPVQRKTTPKIQR 347


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 262 ESGTSDSNRSRFDSSALW 209
           ESGT+D+N+++ D S L+
Sbjct: 47  ESGTNDNNKNKEDLSKLY 64


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 133 PRCSAWSARACCGGCSAL 186
           P  + WS+ A C GC  L
Sbjct: 110 PSDNTWSSEADCSGCKQL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 881,912
Number of Sequences: 5004
Number of extensions: 12087
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)