Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C23
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 38 0.001
09_04_0267 - 16246512-16246689,16247047-16247183,16247376-162474... 36 0.004
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349... 34 0.015
08_02_0793 + 21257843-21258183,21258537-21258573 30 0.32
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 29 0.55
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 28 1.3
10_08_0543 - 18649894-18650233,18651446-18651981 27 3.0
12_01_0707 - 6133561-6133947 26 5.2
11_01_0609 - 4865229-4865510,4865981-4866144,4866219-4866320,486... 26 5.2
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 25 6.8
05_07_0001 + 26976510-26977382 25 6.8
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 25 6.8
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 25 6.8
01_06_1392 + 36995579-36996028,36997145-36997375 25 6.8
12_02_0793 - 23200915-23202931,23203136-23203959 25 9.0
10_08_0436 - 17910948-17911583,17914699-17914929 25 9.0
05_07_0016 + 27066856-27067032,27067431-27067515,27067977-270680... 25 9.0
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/35 (37%), Positives = 27/35 (77%)
Frame = +3
Query: 27 VYMFAEWISVCKRALSRMLVIIVSLGFGIVKPRLG 131
+ ++A + K+ +SR+L+++VS+G+G+V+P LG
Sbjct: 274 ITLWAVTFTAVKKTISRLLLLVVSMGYGVVRPTLG 308
>09_04_0267 -
16246512-16246689,16247047-16247183,16247376-16247471,
16247658-16248579,16249396-16249455,16249860-16250125
Length = 552
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 27 VYMFAEWISVCKRALSRMLVIIVSLGFGIVKPRLG 131
+ +A KR ++R++++IVS+G+G+V+P LG
Sbjct: 315 ITFWAVTFGTVKRTVARVIILIVSMGYGVVRPSLG 349
>11_06_0032 +
19432305-19432510,19433390-19434326,19434880-19434975,
19435518-19435654,19435888-19436056
Length = 514
Score = 34.3 bits (75), Expect = 0.015
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +3
Query: 48 ISVCKRALSRMLVIIVSLGFGIVKPRLG 131
+ ++ +SR+L++ +S+G+G+V+P LG
Sbjct: 287 VGAIRKTISRLLILSISMGYGVVRPTLG 314
>08_02_0793 + 21257843-21258183,21258537-21258573
Length = 125
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 280 MALSSSESGTSDSNRSRFDSSALWRRRSHASIAXXXXXXXXXXXTRCS-AGPRRG 119
MA+ G +RSR S A W RR A++ RCS GPR G
Sbjct: 67 MAMGIGGGGGLARSRSRSGSDAGWWRRRGAALMGDGDGSGADAAVRCSIEGPRAG 121
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 29.1 bits (62), Expect = 0.55
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 145 RCSAGPRRGLTIPKPSDTMMTSIRDKAL 62
RC P RGL KP + +MTS+ D+ +
Sbjct: 235 RCGTCPYRGLPAFKPGEKVMTSLPDRGV 262
>03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 97 DTMMTSIRDKALLHTDIHSANIYTSA 20
DT+ +IR+K L + HS IY SA
Sbjct: 951 DTLQITIREKGLTYIPEHSLEIYASA 976
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 229 FDSSALWRRRSHASIAXXXXXXXXXXXTRCSAGPRRGLTIPKPSDTMMTSIR 74
F S A RRR+ +S+ RCSAGP G I K +S R
Sbjct: 16 FASPAAARRRAASSVYLPGRPLRGGGVVRCSAGPVSGGMISKKGKICSSSSR 67
>12_01_0707 - 6133561-6133947
Length = 128
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 127 WAPRCSAWSARACCGGCSA 183
W R W +R C GGC+A
Sbjct: 56 WLARQRPWWSRRCGGGCAA 74
>11_01_0609 -
4865229-4865510,4865981-4866144,4866219-4866320,
4866674-4867217
Length = 363
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 206 QTQPRVYSAEHPPQHARADHALQRGAQTRLDN 111
Q Q V S P A DHALQR + + N
Sbjct: 221 QRQLTVISQRRPVTEAEKDHALQRAREFKSKN 252
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 51 SVCKRALSRMLVIIVSLGFGIVKPRLGP 134
S+CKRA +R+ V++ I+ P GP
Sbjct: 363 SLCKRAAARLPVVLPIWFLAIIFPFFGP 390
>05_07_0001 + 26976510-26977382
Length = 290
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 275 AVQQRERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQHARADHALQRGAQTRL 117
AV+ R L + A RL G+V+Q + + +AEH + + AL R R+
Sbjct: 143 AVEHENRFLGAE--AYRLEGIVSQAREDIATAEHAIAASEGEAALLRDEVKRV 193
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 100 SDTMMTSIRDKALLHTDIHSANIYTSAL 17
S + + RDK++LH DI + + Y S L
Sbjct: 291 SSLLSSGSRDKSILHHDIRAQDDYISRL 318
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 269 QQRERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQHA 159
QQR+ +R + ++RL+ +VA +++ PP+HA
Sbjct: 137 QQRDAKIRSLRNSIRLLSVVAS----LHAPPQPPRHA 169
>01_06_1392 + 36995579-36996028,36997145-36997375
Length = 226
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 51 SVCKRALSRMLVIIVSLGFGIVKPRLGP 134
S+C RAL+R+ +++ I+ P GP
Sbjct: 90 SICLRALARLPIVVPIWFLAIIFPFFGP 117
>12_02_0793 - 23200915-23202931,23203136-23203959
Length = 946
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 43 NGYPCVRELYHEC 81
NG+ C+RELY C
Sbjct: 825 NGFQCLRELYFTC 837
>10_08_0436 - 17910948-17911583,17914699-17914929
Length = 288
Score = 25.0 bits (52), Expect = 9.0
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 233 AVRLVGLVAQTQPRVYSA--EHPPQHARADHALQRGAQTRLDNTKTERYNDD*HS**SSL 60
A+R V L A + P V SA PP A L+RG + RLD T H S L
Sbjct: 192 ALRDVTLTAFS-PSVVSATARAPPTALLAAGELRRGGEVRLDVT-VSYDRSQVHEPYSPL 249
Query: 59 THGY 48
+HG+
Sbjct: 250 SHGF 253
>05_07_0016 +
27066856-27067032,27067431-27067515,27067977-27068044,
27068128-27068178,27068256-27068329,27068794-27068852,
27068926-27069002,27069173-27069289
Length = 235
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 12 YFNAEVYMFAEWISVCKRALSRMLVIIVSLGFGIVKPRLGP 134
Y NA A+ +S K LS++LVI L K RL P
Sbjct: 103 YMNASGESVAQLVSYFKIPLSQVLVIYDDLDIPFAKLRLLP 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,300,617
Number of Sequences: 37544
Number of extensions: 93734
Number of successful extensions: 303
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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