Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C23
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    47   2e-06
Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    28   0.90 
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    26   3.6  
L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical pr...    25   6.3  

>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 36/65 (55%)
 Frame = +3

Query: 39  AEWISVCKRALSRMLVIIVSLGFGIVKPRLGPALQRXXXXXXXXXXXXAIDAWLRLRHKA 218
           AE +S  K+ +SR+LVIIV +G+G+VKPRLG  L +            +I+   R+    
Sbjct: 286 AEIVSCAKKTMSRVLVIIVCVGYGVVKPRLGQTLNQVAGVGLVYFIFCSIEGIARVSKNT 345

Query: 219 DESNR 233
            E+ R
Sbjct: 346 VEATR 350


>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 278 GAVQQRERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQH 162
           G +   E D   Q +  +L+GLVA T+ +VY  +  P+H
Sbjct: 525 GNITNFEEDPIYQTMKKQLLGLVASTRLKVYILDAVPRH 563


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 260 ERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQH 162
           ++D   Q +  +L+GLVA T+ +VY  +  P+H
Sbjct: 590 DKDPIYQTMKKQLLGLVASTKFKVYILDAVPRH 622


>L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical
           protein ZK688.10 protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 269 QQRERDLRQQQVAVRLVGLVAQTQPRVYSAEHPPQHA 159
           ++RE   +  ++  RL+ L  Q QP V   + PP+++
Sbjct: 232 RRRELIAQNNRIINRLIELNGQEQPVVIDVDSPPKYS 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,050,283
Number of Sequences: 27780
Number of extensions: 75012
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)