Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C21
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 0.73
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 1.7
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 26 1.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 2.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 2.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 2.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 3.0
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.9
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 3.9
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 24 5.2
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 5.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 24 5.2
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 24 5.2
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 24 6.8
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 24 6.8
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 24 6.8
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 24 6.8
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 24 6.8
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 23 9.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 23 9.0
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 23 9.0
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 0.73
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 277 LEQSLLTHLFEFLLGVIVPVELCILPLSFSTNKMLEGKSCDS 152
+ S L H+F LLGV+ + L +L KM CDS
Sbjct: 314 ISSSYLVHIFMILLGVVAAIFLALL-----REKMFTAGFCDS 350
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 158 TGFAFKHFVGTERKRKYAEFYRNYDAEKEFEEMRKKGLFQS 280
T F+F H G ++ + + FE+MR KGL Q+
Sbjct: 1780 TSFSFTHPSGLLSATQFTQPALTLMEKSAFEDMRSKGLVQN 1820
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 266 PSYASLRIPSRRHS-SCRTLHTSSFVQYQQNA*RQI 162
P+ LR+P +R + SCRT H+ S Q ++ Q+
Sbjct: 40 PATGPLRLPFQRPATSCRTFHSKSVEQTIEDVKEQL 75
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 59 DKAVSTIAKPQMRGLLTAVIKKNLIVSLV 145
D ST+ K ++G T+++ NL+VS V
Sbjct: 7 DLVDSTVIKNAVQGQFTSLVSNNLVVSKV 35
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 2.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 180 KCLKANPVIPARTSDTIRFFLI 115
K +K P+ PAR SD R FLI
Sbjct: 927 KSIKPKPLEPARGSDLARDFLI 948
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 2.2
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 38 ILLKMAGDKAVSTIAKPQMRGLL-TAVIKKNLIVSLVLAGITGFAFKH 178
++ +M D + A+ +++G + T V+ K+LIV+ + A + F ++H
Sbjct: 790 MVFEMTSDNNIEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEYEH 837
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 136 ITCPCWNHRICLQAFCWY 189
ITCP +C FCW+
Sbjct: 451 ITCPWLYVGMCFSTFCWH 468
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 3.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +1
Query: 127 PYCITCPCWNHRIC 168
P C CW+H +C
Sbjct: 19 PVTCQCECWDHNLC 32
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 326 NNNNSHTTLQMSMFSMTGTVPSYASLRIPSRR 231
N N+ T L M +FS GTV +L+ P R
Sbjct: 16 NKNDLRTALYM-LFSTYGTVVDIVALKTPKMR 46
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 230 DAEKEFEEMRKKGL 271
+A KEF+E+R+KGL
Sbjct: 25 EAVKEFDELRQKGL 38
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 152 GITGFAFKHFVGTERKRKYAEFYRNYDAEKEFEEM 256
G+ G A R RK+AEF++ ++F E+
Sbjct: 303 GLVGKAMAFLTSVIRIRKHAEFFQQDQVLQQFIEL 337
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.2 bits (50), Expect = 5.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 309 YYTTNVNV*HDWN 271
YYT ++N+ H WN
Sbjct: 568 YYTRDININHAWN 580
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 269 VPSYASLRIPSRRHSSCRTLHTSSFVQYQQNA 174
+ Y SLR ++ + CR S+FV + +A
Sbjct: 40 IRQYRSLRFANKEENICRLTPNSAFVPVRDSA 71
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 209 AEFYRNYDAEKEFEEMRKKGLFQSC 283
A+F+R Y+A K F ++K + C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 126 TLLYHLSLLESQDLPSSI 179
T L H +LLE +D PSS+
Sbjct: 141 TKLIHSTLLEERDTPSSL 158
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 311 HTTLQMSMFSMTGTVPS 261
H T Q+ MFS TG P+
Sbjct: 349 HITQQIGMFSFTGLTPA 365
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 153 PARTSDTIRFFLITAVSSPRIWGLAMVDTALSP 55
P R S T+ + ++ +SP +G ALSP
Sbjct: 322 PLRRSSTMNYKSVSTTTSPSKYGYVSGRIALSP 354
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 112 SSQQSTHLGLGNGRYSLVSCHF**NISRKTSNGTTL 5
SSQ ++ G G + + H+ + SRK+S+ +L
Sbjct: 189 SSQHASRYNEGRGSFDTLGTHYHLSKSRKSSSSDSL 224
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 133 CITCPCWNHRICLQ 174
CI C W H CLQ
Sbjct: 141 CILCEDWFHEKCLQ 154
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 188 TERKRKYAEFYRNYDAEKEFEEMRKK 265
+E + KYAE+ R +E ++++KK
Sbjct: 887 SELEEKYAEYLRKLALLEEVKDLKKK 912
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/38 (28%), Positives = 14/38 (36%)
Frame = +1
Query: 34 KYFIKNGRRQGCIYHCQAPNAWTADCCDQEEPYCITCP 147
K+F KN + DCCD + I CP
Sbjct: 83 KFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCP 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,525
Number of Sequences: 5004
Number of extensions: 27215
Number of successful extensions: 105
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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