Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C21
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 29 0.67
01_01_0771 - 5982826-5983327,5983424-5984772 27 2.7
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798... 27 3.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 3.6
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 27 4.7
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 26 6.2
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 26 6.2
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 26 6.2
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 26 8.3
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 26 8.3
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 308 TTLQMSMFSMTGTVPSYASLRIPSRRHSSCRTLHTSSFVQYQQNA 174
T L +S+F+M +VPS ++R SS T H S+V+Y Q A
Sbjct: 586 TVLIVSLFAMVRSVPSRM-----AKRFSSQSTDHDHSYVEYPQEA 625
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 192 SVPTKCLKANPVIPARTSDTIRF-FLITAVSSPRIWGLAMVDTALSPAIFNKIF 34
+ P + + ++PA + T+ L+ A +P++WG+ +V S +I +F
Sbjct: 485 AAPERWVGYTVLVPAWAAGTLGIQLLVPAARAPKVWGVPLVPWLPSLSIATNLF 538
>12_02_0841 +
23579344-23579394,23579522-23579584,23579717-23579826,
23580220-23580320,23580816-23580877,23580972-23581112,
23581388-23581523,23582257-23582284,23582665-23582728,
23582924-23583044,23583565-23583623,23583716-23583784,
23583875-23584015,23584130-23584194,23584345-23584441,
23584803-23584862,23585409-23585561,23586022-23586088,
23586174-23586284,23586689-23586799,23587370-23587567,
23587679-23587860
Length = 729
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 34 KYFIKNGRRQGCIYHCQAPNAWTADCCDQE 123
KYF+ + GC YH A A C D++
Sbjct: 351 KYFLDARKLPGCTYHVYVAYATMAFCLDKD 380
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 146 LAGITGFAFKHFVGTERKRKYAEFYRNYDAEKEFEEMRKKGLFQSC 283
L G GFA VG R A+ D ++ F+E++ GL + C
Sbjct: 655 LIGSKGFASGIAVGESRHIYVAKVKNKKDKDEVFDELKAAGLKRPC 700
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 60 TRLYLPLPS-PKCVDC*LL*SRRTLLYHLSLLESQDL 167
TR Y PL S P LL + RTLL HLSL E D+
Sbjct: 141 TREYTPLLSYPGHASLALLRADRTLLAHLSLDEPADV 177
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 79 CQAPNAWTADCCDQE 123
C AP+AW DC QE
Sbjct: 109 CDAPDAWADDCSMQE 123
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 26.2 bits (55), Expect = 6.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 133 CITCPCWNHRIC 168
C C CW H+IC
Sbjct: 899 CDKCECWQHQIC 910
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 26.2 bits (55), Expect = 6.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 133 CITCPCWNHRIC 168
C C CW H+IC
Sbjct: 1000 CDKCECWQHQIC 1011
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 185 GTERKRKYAEFYRNYDAEKEFEEMRKKGLF 274
G E +R+ F NYD + F+E++ G++
Sbjct: 85 GHEPRRREFNFEGNYDVVRFFKEIQNAGMY 114
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 185 GTERKRKYAEFYRNYDAEKEFEEMRKKGLF 274
G E R+ F NYD + F+E++ GL+
Sbjct: 85 GHEPHRRQYNFVGNYDIVRFFKEIQNAGLY 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,928,692
Number of Sequences: 37544
Number of extensions: 172363
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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