Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C20
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   1.2  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   6.2  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   6.2  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   GGHRPSWTCTEPYRGERTDSINSVLTPPTILTSHQ 112
           GGH  +  C      + +DSI+ +LT  TI   H+
Sbjct: 357 GGHDGTIRCWSLPANQTSDSISKILTGSTIFQGHE 391


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 146 LCRMANFCARRR*STASTLKRTSKARPAQEQTDNNHN 256
           L R  +F  RRR S + T   T+     QEQ  N  N
Sbjct: 581 LFRKNSFPKRRRLSNSDTPSETTTPNNEQEQVSNQAN 617


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 330 VQEHHLPQGNHHLLHIQRHLAVPVWLWLL 244
           +Q H L  G+ +++H       P W W++
Sbjct: 62  IQLHKLCNGHKNIIHFYNTAENPQWRWVV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,759
Number of Sequences: 5004
Number of extensions: 25056
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)