Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C20
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213...    28   3.5  
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211...    27   4.6  
01_06_1075 + 34350155-34350709                                         27   6.0  
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    27   8.0  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    27   8.0  

>02_01_0317 -
           2128660-2128776,2129281-2129364,2129463-2129543,
           2130230-2130407,2130530-2130673,2130780-2130826,
           2131149-2131205,2131989-2132087,2132301-2132423,
           2132514-2132636,2132859-2132972,2133612-2133800,
           2134408-2134574,2134707-2134791,2134891-2135085,
           2135162-2135251,2135418-2135603,2135885-2135959,
           2136757-2136957
          Length = 784

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 84  VSTELILSVLS---PRYGSVQVHDGRWP 10
           V+ E +LS L     RY + Q HDG WP
Sbjct: 114 VTGEAVLSSLKRAIARYSTFQAHDGHWP 141


>02_01_0315 -
           2111095-2111241,2111496-2111579,2111803-2111883,
           2112133-2112310,2112447-2112623,2112688-2112734,
           2112845-2112901,2113339-2113437,2113696-2113818,
           2113895-2114017,2114241-2114264,2115096-2115209,
           2115315-2115503,2115691-2115857,2116846-2116930,
           2117698-2117778,2118239-2118424,2119266-2119314,
           2119777-2119810,2120087-2120153,2120198-2120419
          Length = 777

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 84  VSTELILSVLSP---RYGSVQVHDGRWP 10
           V+ E +L+ L     RY ++Q HDG WP
Sbjct: 146 VTEEAVLTSLKRAIRRYSTLQAHDGHWP 173


>01_06_1075 + 34350155-34350709
          Length = 184

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  YRGERTDSINSVLTPPTILTSHQH 115
           +R +  D+  SV +PPT+L  H H
Sbjct: 158 FRSQLLDTSYSVFSPPTLLYDHPH 181


>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 77  VLTPPTILTSHQHEDSTP 130
           +L+PP++   HQH+ +TP
Sbjct: 113 LLSPPSVSAHHQHQPATP 130


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   GGHRPSWTCTEPYRGERTDSI-NSVLTPPTILTSHQHEDSTP 130
           GG RP+ T T P      +   N +  P T L  H+  +  P
Sbjct: 213 GGSRPAVTATRPAAAPNAERFENRLKKPTTFLCKHKFRNELP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,293,693
Number of Sequences: 37544
Number of extensions: 199707
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)