Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C20
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    33   0.063
Z83230-2|CAC42304.1|  444|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    26   1.1  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    26   1.1  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    26   1.1  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    26   1.1  
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        29   1.4  
U41624-6|AAF99940.1|  127|Caenorhabditis elegans Hypothetical pr...    24   3.3  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 62  DSINSVLTPPTILTSHQHEDSTPICFIGLCRMANFCARRR*STASTLKRTSKARPAQEQT 241
           + +N  L+PP    SH H D + +   G  R   F  R    TA+T    S A  +Q  T
Sbjct: 157 EPLNHSLSPPGFHNSHHHRDDSLVLAGGNFRRNGFGRRSERFTAATTSAQSFAESSQIST 216

Query: 242 DNN 250
            N+
Sbjct: 217 GNS 219


>Z83230-2|CAC42304.1|  444|Caenorhabditis elegans Hypothetical
           protein F56A8.3a protein.
          Length = 444

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 396 ALHLLPQAFCLQSKMAVVLL*MVQEHHLPQGNHHLLHIQRHL 271
           A+  LP++FC  +K+  +     Q HHLP G   L  +Q HL
Sbjct: 49  AITFLPESFCKMTKLIRLDFGSCQLHHLPDGIGLLTSLQ-HL 89


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 68  CGCGCGCC 75



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 121 CGCGCGCC 128



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 260 CGCGCCR 240
           CGC CCR
Sbjct: 84  CGCCCCR 90


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 66  CGCGCGCC 73



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 122 CGCGCGCC 129



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 260 CGCGCCR 240
           CGC CCR
Sbjct: 83  CGCCCCR 89


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 66  CGCGCGCC 73



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 121 CGCGCGCC 128



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 260 CGCGCCR 240
           CGC CCR
Sbjct: 82  CGCCCCR 88


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 67  CGCGCGCC 74



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 122 CGCGCGCC 129



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 260 CGCGCCR 240
           CGC CCR
Sbjct: 83  CGCCCCR 89


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 62  DSINSVLTPPTILTSHQHEDSTPICFIGLCRMANFCARRR*STASTLKRTSKARPAQEQT 241
           + +N  L+PP    SH H D + +   G  R   F  R    TA+T    S A  +Q  T
Sbjct: 203 EPLNHSLSPPGFHNSH-HRDDSLVLAGGNFRRNGFGRRSERFTAATTSAQSFAESSQIST 261

Query: 242 DNN 250
            N+
Sbjct: 262 GNS 264


>U41624-6|AAF99940.1|  127|Caenorhabditis elegans Hypothetical
           protein F46C8.1 protein.
          Length = 127

 Score = 24.2 bits (50), Expect(2) = 3.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 260 CGCGCCRFALEQ 225
           CGC CCR+   Q
Sbjct: 13  CGCACCRWCFFQ 24



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGC CC
Sbjct: 6   CCCGCFCC 13


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 32  CTEPYRGERTDSINSVLTPPTILTSHQHE 118
           CTE ++G R ++ NSVL+ P +   ++++
Sbjct: 174 CTEGWQGRRCETKNSVLSSPVMGKCYKYD 202


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 327 QEHHLPQGNHHLLHIQRHL 271
           + HH  + NHH L +Q HL
Sbjct: 342 ETHHSSKANHHPLSVQHHL 360


>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 131 ICFIGLCRMANFCARRR*STASTLKRTSKARPAQEQTDNNH 253
           +CF G   +A+    +  S+AST  RT+++    ++TDN +
Sbjct: 72  LCFSGNTSLADDPTVQSDSSASTQSRTNQSGTIAQETDNRN 112


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 80  CGCGCGCC 87



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 125 CGCGCGCC 132


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 107 CGCGCGCC 114


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 107 CGCGCGCC 114


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 266 CQCGCGCC 243
           C CGCGCC
Sbjct: 110 CGCGCGCC 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,876,100
Number of Sequences: 27780
Number of extensions: 152936
Number of successful extensions: 421
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)