Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C18
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 63 2e-11
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 61 8e-11
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 54 1e-08
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 54 1e-08
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 53 2e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 48 5e-07
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 45 6e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 42 3e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 40 2e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 39 4e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 37 0.002
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 36 0.004
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 29 0.42
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 0.73
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.3
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 1.7
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 1.7
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 3.0
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 3.9
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 25 5.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 5.2
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 6.8
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 6.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.8
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 6.8
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 6.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 24 9.0
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 24 9.0
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 63.3 bits (147), Expect = 2e-11
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +1
Query: 244 CHKTFAVPARLVRHYRTHTGERPFECEY--CHKMFSVKENLQVHRRIHTKERTYRCNV-- 411
C K ++ P+ L +H RTH+ ERPF C+Y C K F K +L++H+R HT + + C+
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 412 CDAGF 426
CDA F
Sbjct: 90 CDAQF 94
Score = 58.0 bits (134), Expect = 6e-10
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +1
Query: 94 KFDIKQYRSAGEDERVHQCG--ECGLTLSTRSALTAHARSHRTTADAHRCDV--CHKTFA 261
+ + K RSA +++ C ECG S S L H R+H + CD C K F
Sbjct: 10 EIESKNLRSA---KKIFHCPYEECGKKYSRPSLLEQHLRTH-SNERPFVCDYTGCSKAFY 65
Query: 262 VPARLVRHYRTHTGERPFECEY--CHKMFSVKENLQVHRRIHTKERTYRC--NVCDAGF 426
+ L H R HT +PF C Y C F +++L+ H +H K + Y C CD F
Sbjct: 66 RKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECF 124
Score = 52.0 bits (119), Expect = 4e-08
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Frame = +1
Query: 130 DERVHQCGECGLTLSTRSALTAHARSHRTTAD---AHRCDV--CHKTFAVPARLVRHYRT 294
+ V C CG T + L H H+TT + + C + C K+F + L +H
Sbjct: 200 EAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISV 259
Query: 295 -HTGERPFECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCDAGFEHSG 438
H G F C+ C F K LQ H T ++ ++ + + G +H G
Sbjct: 260 IHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKHDG 308
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 60.9 bits (141), Expect = 8e-11
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Frame = +1
Query: 172 STRSALTAHARSHRTTADA---HRCDVCHKTFAVPARLVRHYRTHTGERPFECEY--CHK 336
++R +H S T++ A +RC C + F+ P+ L H +HTGERPF C+Y C K
Sbjct: 446 TSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGK 505
Query: 337 MFSVKENLQVHRRIH 381
F+V+ N++ H+RIH
Sbjct: 506 AFNVRSNMRRHQRIH 520
Score = 31.9 bits (69), Expect = 0.045
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 142 HQCGECGLTLSTRSALTAHARSHRTTADAHRCDV--CHKTFAVPARLVRHYRTH 297
++C EC S S+L H SH T CD C K F V + + RH R H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSH-TGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 30.3 bits (65), Expect = 0.14
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 313 FECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCDAG 423
+ C C + FS +L++H HT ER + C+ G
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCG 504
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 91 SKFDIKQYRSAGEDERVHQCGECGLTLSTRSALTAHARSH 210
S I Y GE V CG + RS + H R H
Sbjct: 481 SSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 54.0 bits (124), Expect = 1e-08
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 166 TLSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEY--CHKM 339
T +T + + + + ++C +C K F RH RTHTGE+P C + C K
Sbjct: 5 TTATTTGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKR 64
Query: 340 FSVKENLQVHRRIHTKERTYR 402
FS + L H RIHT + R
Sbjct: 65 FSRSDELTRHARIHTNANSRR 85
Score = 31.1 bits (67), Expect = 0.079
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 307 RPFECEYCHKMFSVKENLQVHRRIHTKERTYRC 405
RP++C C K F E+ H R HT E+ + C
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVC 56
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 53.6 bits (123), Expect = 1e-08
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 226 AHRCDVCHKTFAVPARLVRHYRTHTGERPFECEY--CHKMFSVKENLQVHRRIHTKE 390
++ C C + F VRH R+HTGE+PFEC Y C K F+ ++ L H R H ++
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRK 59
Score = 32.7 bits (71), Expect = 0.026
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 307 RPFECEYCHKMFSVKENLQVHRRIHTKERTYRCN 408
+ +EC +C ++F +E+ H R HT E+ + C+
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECS 35
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 53.2 bits (122), Expect = 2e-08
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 244 CHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCDAG 423
C+K F L H THT RPF+C C K F+ + + + H ++HT + + C C+
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQR 636
Query: 424 F 426
F
Sbjct: 637 F 637
Score = 41.9 bits (94), Expect = 4e-05
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 157 CGLTLSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHK 336
C + L +H +H T +C +C K+FA RH + HTG + F C C++
Sbjct: 577 CNKRFTRAYNLKSHMNTH-TNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQ 635
Query: 337 MFSVKENLQVHRRIHTKERTYR 402
F+ + L H + + R
Sbjct: 636 RFARMDALNRHYKSEVGQNCLR 657
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 48.4 bits (110), Expect = 5e-07
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 235 CDVCHKTFAVPARLVRHYRT-HTGERPFECEYCHKMFSVKENLQVHRRIHTK-ERTYRCN 408
C C K F L RH R+ HT E+PF C C K FS ++NL+ H R+H C
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASPRLACF 483
Query: 409 VCDAGFEHSG 438
+G+ SG
Sbjct: 484 FQPSGYYSSG 493
Score = 33.1 bits (72), Expect = 0.019
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 301 GERPFECEYCHKMFSVKENLQVH-RRIHTKERTYRCNVCDAGF 426
G + F C C K F E+L+ H R +HT E+ + C +C F
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRF 460
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 44.8 bits (101), Expect = 6e-06
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 244 CHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERTYRC 405
C+K A + H +TH +RP+ C+ C F +L+ H RIH R Y C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC 503
Score = 43.2 bits (97), Expect = 2e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 157 CGLTLSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHK 336
C ++ + + +H ++H + +RCD+C F L RH R H RP+ CE C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRP-YRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLK 507
Query: 337 MFSVKENLQVHRR 375
F+ + L H++
Sbjct: 508 RFNRLDALNRHKQ 520
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 229 HRCDVCHKTFAV----PARLVRHYRTHTGERPFECEY--CHKMFSVKENLQVHRRIHTKE 390
HRC ++ + P + Y + + C Y C+K + K N++ H + H +
Sbjct: 411 HRCKTRKQSTRICRIPPETMASLYCGPEADGKYVCLYNGCNKRIARKYNVESHIQTHLSD 470
Query: 391 RTYRCNVCDAGF 426
R YRC++C AGF
Sbjct: 471 RPYRCDLCKAGF 482
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 42.3 bits (95), Expect = 3e-05
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 175 TRSALTAHARSHRTTADAHRCDV--CHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSV 348
T L +R+HR C C K+F L RH RTH + F C +C++ F+
Sbjct: 8 TEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFAR 67
Query: 349 KENLQVH-RRIHTKER 393
+ L H +++H +++
Sbjct: 68 SDVLNRHVQQMHLQKQ 83
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 274 LVRHYRTHT-GERPFECEY--CHKMFSVKENLQVHRRIHTKERTYRCNVCDAGFEHS 435
L + R H G+ F C Y C K F+ KE+L+ H R H + + C+ C+ F S
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARS 68
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 39.5 bits (88), Expect = 2e-04
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +1
Query: 235 CDVCHKTFAVPARLVRHYRTHTGERPFECEY-------CHKMFSVKENLQVH-RRIHTKE 390
C+ C + FA L RH R+HT E+PF C C + FS ++ L H ++IH
Sbjct: 72 CETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNP 131
Query: 391 RTYR 402
+ R
Sbjct: 132 QPRR 135
Score = 33.9 bits (74), Expect = 0.011
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 307 RPFECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCD 417
+ + CE C + F+ E+L+ H R HT E+ + C+ D
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEID 104
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 38.7 bits (86), Expect = 4e-04
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 199 ARSHRTTADAHRCDV--CHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVH- 369
+R+++ ++CD C K+F RH+R+HT + F C +C F+ + L H
Sbjct: 7 SRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
Query: 370 RRIHTKE 390
+ H K+
Sbjct: 67 NQKHVKQ 73
Score = 35.1 bits (77), Expect = 0.005
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 301 GERPFECEY--CHKMFSVKENLQVHRRIHTKERTYRCNVCDAGFEHS 435
G+ ++C++ C K F+ KE+ + H R HT + + C C + F S
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRS 59
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 235 CDVCHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVH-RRIH 381
CD C K F L RH H+ P C YC K+ L+ H +R H
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
Score = 35.5 bits (78), Expect = 0.004
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 304 ERPFECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCD 417
+R F C+ C K F+ ENL H+ H+K C C+
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCE 65
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 35.5 bits (78), Expect = 0.004
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 274 LVRHYRTHTGERPFECEY--CHKMFSVKENLQVHRRIHTKERTYR 402
LV H R+HTGE+PF C C + F+ + L H R + T R
Sbjct: 93 LVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEADTLR 137
Score = 31.9 bits (69), Expect = 0.045
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 148 CGECGLTLSTRSALTAHARSHRTTADAHRCDV--CHKTFAVPARLVRHYRT 294
C G+ ++R AL AH RSH T C V C ++F L +H RT
Sbjct: 80 CPRKGMVQTSRFALVAHLRSH-TGEKPFICSVPECDRSFTRSDALAKHMRT 129
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 28.7 bits (61), Expect = 0.42
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 289 RTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERTYRCNVC 414
R + + C +C+K FS + L + T E T+ CNVC
Sbjct: 128 RNDFDSKGYVCPFCNKKFSSLDVLS----LVTNEGTFACNVC 165
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 0.73
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 316 ECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCD 417
ECE CH+ + K L++ ++ ++ + C +CD
Sbjct: 1111 ECEICHEWYHAK-CLKMSKKKLRQDEKFTCPICD 1143
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 319 CEYCHKMFSVKENLQVHRRIHTKERTYR 402
C+ HK+ S+K+ HRR +K+R R
Sbjct: 125 CQKLHKVVSIKKEESKHRRRPSKKRRIR 152
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 316 ECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCD 417
ECE CH+ + K +++ E+ + C +CD
Sbjct: 1186 ECELCHEWYHAKCMKMSKKKLRADEK-FICPICD 1218
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 263 YLRDWYVITVPILVRGLSNVNTATKCSVSKKTYKCIVV 376
YL D++ I P+ RGL+ ++ C V+ K + V
Sbjct: 233 YLEDFWAIEGPMWYRGLAQLSEEEACEVALNVTKTLNV 270
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 275 WYVITVPILVRGLSNVNTA 331
WY +T P+L+ L VN A
Sbjct: 6 WYTLTAPLLISSLYTVNAA 24
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 87 FIEV*YKTISFCR*RRTCTSM 149
F E +TI FCR R+TC S+
Sbjct: 547 FAEKRVRTIVFCRVRKTCESL 567
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 3.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 272 DWYVITVPILVRGLSNV-NTATKCSVSKKTYKCIVVFIQRNGPTGATSVTQASNIL 436
DW + +PIL +SNV N CS S K ++ I P + T +N+L
Sbjct: 450 DWKITNMPILRDSVSNVFNNQVLCS-SNFFQKDNLLVIVHESPRVLGNGTSETNVL 504
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 151 HIDVHVRLHLQNDIVLYQTSIKI 83
++ VH RL+ ++DIVL Q+ KI
Sbjct: 131 NLGVHARLNQRHDIVLAQSQRKI 153
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 316 ECEYCHKMFSVKENLQVHRRIHTKERTYRCNVCD 417
+CE+C+ F + L H R E+ RC +CD
Sbjct: 246 KCEFCNTHFYDDDELFKHCR----EKHERCYICD 275
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 5.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 307 RPFECEYCHKMFSVKENLQVHR 372
+P+ CE C K + L+ HR
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHR 418
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 135 TCTSMWGVWPDTVHPECPDCSRSFAPD 215
T T++W VW ++ E P+ R+ P+
Sbjct: 396 TNTNIWWVWAESRCTEIPESKRTVFPN 422
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 24.6 bits (51), Expect = 6.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 169 LSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYR 291
LST +AL RSH A+ H + K A+ RLV + R
Sbjct: 417 LSTMAALHKSQRSHDLAANEHAPILNPKNSALNPRLVTNDR 457
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 180 ECPDCSRSFAPDYSRCPSLRRLPQNLRCTCA 272
+C DC + + D P L++ P TCA
Sbjct: 276 QCADCKKYYHMDCVVPPLLKKPPHGFGWTCA 306
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 24.6 bits (51), Expect = 6.8
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 157 CGLTLSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCH 333
C +L+T + R R TA + D + +V L++ GE+P+ EY H
Sbjct: 724 CKRSLNTADTVIK-VRRQRPTATFYSSDNTYTLKSVEGALMKIPLRLAGEKPWYVEYSH 781
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 166 TLSTRSALTAHARSHRTTADAHRCDVCHKTFAVPARLVRHYRTH 297
TL+ S A + + A RCD C F + L H RT+
Sbjct: 119 TLNGTSVANASKQPNMPNA-TFRCDKCDMMFVKQSGLTNHKRTY 161
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.2 bits (50), Expect = 9.0
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 180 ECPDCSRSFAP 212
+CPDC+R++ P
Sbjct: 146 QCPDCARTYTP 156
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 165 DTVH--PECPDCSRSFAPDYSRCPSLRRLPQNLRCTCAIGTSLP 290
DT+H P C CS S P ++ RR+ + + T + +P
Sbjct: 134 DTLHVCPTCGSCSDSKKPQSNKKHRGRRVKHSPKSTLEVPDGIP 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,694
Number of Sequences: 5004
Number of extensions: 41872
Number of successful extensions: 175
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -