Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C17
(164 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 24 2.3
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 24 3.1
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 24 3.1
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 24 3.1
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 24 3.1
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 24 3.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 4.1
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 23 4.1
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 23 4.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 23 5.4
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 7.1
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 22 9.4
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 2.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 1 LNSARGFS*AHFKF-SRDPYFGKYCSNVLPDT 93
LN A G H F SRDP F + ++LP T
Sbjct: 162 LNWATGGGIQHNNFVSRDPEFSIFVGDLLPTT 193
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEVCL 25
LSIW +S+IWV VCL
Sbjct: 131 LSIWINENRFYSEIWVPIAIYVCL 154
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEVCL 25
LSIW +S+IWV VCL
Sbjct: 131 LSIWINENRFYSEIWVPIAIYVCL 154
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEVCL 25
LSIW +S+IWV VCL
Sbjct: 131 LSIWINENRFYSEIWVPIAIYVCL 154
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEVCL 25
LSIW +S+IWV VCL
Sbjct: 131 LSIWINENRFYSEIWVPIAIYVCL 154
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEVCL 25
LSIW +S+IWV VCL
Sbjct: 131 LSIWINENRFYSEIWVPIAIYVCL 154
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 156 FHIMLSNDIILKYTYRWCLALSIW*YIRTVFSKI 55
++I++S I Y +CL +S+W R +F ++
Sbjct: 579 WYILIST--IYSLAYAFCLGISVWTPWRELFYRV 610
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 26 KHTSNSLATHILENTVLMYYQILNAKH 106
K+ AT I++ Y ILN+KH
Sbjct: 48 KYKGQEFATEIIDTAGQDEYSILNSKH 74
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 96 LSIW*YIRTVFSKIWVAREFEV 31
L++W Y T ++W REF +
Sbjct: 266 LALWIYYLTDIPRLWQMREFYI 287
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 129 ILKYTYRWCLA 97
+L+ TYRWCL+
Sbjct: 557 LLESTYRWCLS 567
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 119 TPIDGAWH*VSGNTLEQYFPKYGSRENLKC 30
T I H + + YFPK ++E LKC
Sbjct: 147 TKISKNHHSIIRTPKKSYFPKDHAKELLKC 176
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 116 PIDGAWH*VSGNTLEQYFPKYG 51
P D A + + L QY P+YG
Sbjct: 108 PTDDAHYDLEKQALMQYLPQYG 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,859
Number of Sequences: 5004
Number of extensions: 11328
Number of successful extensions: 29
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -