Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C17
         (164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF068718-7|AAM45356.1|  274|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    25   9.5  

>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
          protein F21H7.3 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 18 IFLSTLQILSRPIFWKILF 74
          IF+  L I+ R I+WKILF
Sbjct: 43 IFVGILIIIDRIIYWKILF 61


>Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical
           protein R08H2.4 protein.
          Length = 320

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 130 YSQIHLSMVLGIKYLVIH*NSIFQNMGRERI*SVLRKILVP 8
           Y  +   + LG+  + I+ N  +  +G+  I   LRKI +P
Sbjct: 94  YCLLTCLLALGVSLIAIYENRFYATIGQNSIWHHLRKIYLP 134


>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 141 SNDIILKYTYRWCLALSIW*YIRTVF 64
           S+DI LKY+  W + L +   I T+F
Sbjct: 5   SDDISLKYSLPWLILLQVGVIITTLF 30


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 65  NTVLMYYQILNAKHHR*VYLRIMSLLNIM 151
           NT+  Y + +N K+    Y+ I+SL+N++
Sbjct: 295 NTLFHYCRTVNTKYGPSRYIEIISLINVI 323


>AF068718-7|AAM45356.1|  274|Caenorhabditis elegans Hypothetical
           protein R01B10.6 protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 6   FGTRIFLSTLQILSRPIFWKILF*CITRY-LMPSTI 110
           FG   FLSTL  LS  IF   +   + RY L+PS++
Sbjct: 3   FGKDCFLSTLVELSVAIFIAAVTPLLIRYCLLPSSV 38


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 98  H*VSGNTLEQYFPKYGSRENLKCA*ENPRAE 6
           H  S  +L   F KY  +EN++ A  NPR++
Sbjct: 273 HFNSNLSLRIRFVKYDKKENVEYAIRNPRSD 303


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  SRDPYFGKYCSNVLPD 90
           S DP FGK CS +L D
Sbjct: 238 SPDPSFGKPCSTILGD 253


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 98  H*VSGNTLEQYFPKYGSRENLKCA*ENPRAE 6
           H  S  +L   F KY  +EN++ A  NPR++
Sbjct: 273 HFNSNLSLRIRFVKYDKKENVEYAIRNPRSD 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,885,646
Number of Sequences: 27780
Number of extensions: 59653
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)