Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C15
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   1.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   9.5  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 4   NSARGKHPAPMQRPSREQYAAMCARAQATGQPLPAHVFTHVNGKPTNIS 150
           ++A  K P    +  ++     C RA A  + L  H+ +H N KP   S
Sbjct: 53  STAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCS 101


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 136 PTN-ISGRGGRRHVISWMDAPDELYFRATDSAKAARRTLSCGELRRGARA 282
           P N I G+GG   V+ WM +P E   R T     A   +   E+RR A A
Sbjct: 803 PANSIIGQGGLDRVVEWMLSP-EPRNRPTIDQILATDEVCWVEMRRKAGA 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,108
Number of Sequences: 5004
Number of extensions: 19431
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)