Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C14
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 26 0.97
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 26 1.3
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 26 1.3
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 3.0
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 3.0
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 24 3.9
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 23 6.9
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 23 6.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 23 9.1
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 23 9.1
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 23 9.1
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 23 9.1
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 0.97
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 241 GRIKCTLIPGDGVGPE 288
G+ TLIPGDG+G E
Sbjct: 19 GKYTVTLIPGDGIGRE 34
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 1.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 226 MRQKEGRIKCTLIPGDGVGPE 288
++ G T+I GDG+GPE
Sbjct: 39 VKNANGNYTVTMIAGDGIGPE 59
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 136 QHIGKGVHTSSVNTERNVRFAAPIGSLCNPMRQKEG 243
QHIG VHT+S+ ++ + P G LC + Q++G
Sbjct: 230 QHIGINVHTNSLEFKKVEKL--PSGELC--IHQQDG 261
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 211 SLCNPMRQKEGRIKCTLIPGD 273
SLC G IKC+ IP D
Sbjct: 1506 SLCQVEASTRGHIKCSSIPAD 1526
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 24.6 bits (51), Expect = 3.0
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 87 DVTYQPKCFSCPCTGITTHRQGSPYKFGKH*EKCTFCCPH 206
D+ Y KC CT T ++ + F H F CPH
Sbjct: 14 DIRY--KCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPH 51
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 272 SPGIRVHLIRPSFCRIGLQSEPMGAAKRTFL--SVFTELVW 156
SPG++ +L+ S G+Q++P+ RT L FT + W
Sbjct: 169 SPGMKHYLLLLSVSFYGIQNDPL-LCTRTHLPSKYFTSVSW 208
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 17 RKDGPKIFLVKISLFLKVFGKF*GCHLSAE 106
RKD P IFL+ L GCH +
Sbjct: 573 RKDTPNIFLIISQLMENTMLPVSGCHFGLD 602
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 242 PSFCRIGLQSEPMGAAKRTFLSVFT 168
P FC I Q + + A +FLSV+T
Sbjct: 227 PLFCSIQYQGKYIMCAGGSFLSVYT 251
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 179 REMYVLLPPLVHFATQ 226
RE+Y+L+P L+ AT+
Sbjct: 1126 RELYILIPKLLDVATK 1141
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 151 GVHTSSVNTERNVRFAAPIGSLCN 222
GV TSS +E V + AP+ +C+
Sbjct: 144 GVVTSSKKSESPVEYKAPLTIVCD 167
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 73 WQILRMSLISRNVFRALVQGSQHIGKGVHTSSVNTE 180
W I + +I + + + +++ Q + K V S +NT+
Sbjct: 349 WAIFSLPMIQKALPKGVLEEIQSLLKEVEISEINTQ 384
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 215 SEPMGAAKRTFLSVFTELVWT 153
+EP+ ++FLS FT+ WT
Sbjct: 127 AEPVAKYLKSFLSEFTKRRWT 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,058
Number of Sequences: 5004
Number of extensions: 25559
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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