Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C14
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 28 1.4
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 28 1.4
06_03_0756 + 24244313-24244999 27 1.9
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 27 2.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 2.5
06_03_0244 + 18637406-18637511,18637576-18638123 27 3.3
05_01_0078 - 523366-525196,525622-525675,527135-529341 26 5.8
03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781... 26 5.8
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 26 5.8
08_02_0308 + 15617044-15617173,15618342-15618757 25 7.7
04_01_0260 - 3506672-3508981 25 7.7
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 25 7.7
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 27.9 bits (59), Expect = 1.4
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 7 GFAAQRRSKNISCKN*PFSKGIWQILRMSLISRNVFRAL--VQGSQHIGKGVHTSSVNTE 180
GF A+ K + N P + +LR + R V L ++G I K +HT ++N E
Sbjct: 301 GFDARGNIKVLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLEGRTQIFK-IHTRTMNCE 358
Query: 181 RNVRFAAPIGSLCNPMRQKEGRIKCT 258
R++RF + LC + R CT
Sbjct: 359 RDIRFEL-LARLCPNSTGADIRSVCT 383
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 27.9 bits (59), Expect = 1.4
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 7 GFAAQRRSKNISCKN*PFSKGIWQILRMSLISRNVFRAL--VQGSQHIGKGVHTSSVNTE 180
GF A+ K + N P + +LR + R V L ++G I K +HT ++N E
Sbjct: 301 GFDARGNIKVLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLEGRTQIFK-IHTRTMNCE 358
Query: 181 RNVRFAAPIGSLCNPMRQKEGRIKCT 258
R++RF + LC + R CT
Sbjct: 359 RDIRFEL-LARLCPNSTGADIRSVCT 383
>06_03_0756 + 24244313-24244999
Length = 228
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = -1
Query: 224 GLQSEPMGAAKRTFLSVFTELVWTP---LPMCCDPCTRARKTFRLISDILKICQIPLE 60
G EP RT L L PMCC P T A K +SDI+ + LE
Sbjct: 71 GWLQEPSSPTPRTSLPTRLALTCAATLVFPMCCSPTTAAGK----VSDIVDYLPVELE 124
>08_01_0364 -
3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 190 RFAAPIGSLCNPMRQKEGRIKCTLI 264
R PI S+C+ ++ KEGRI+ L+
Sbjct: 327 RSGRPIKSICSRLKAKEGRIRGNLM 351
>05_01_0367 -
2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 190 RFAAPIGSLCNPMRQKEGRIKCTLI 264
R PI S+C+ ++ KEGRI+ L+
Sbjct: 365 RSGRPIKSICSRLKAKEGRIRGNLM 389
>06_03_0244 + 18637406-18637511,18637576-18638123
Length = 217
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 254 HLIRPSFCRIG-LQSEPMGAAKRTFLSVFTELVWTPLP 144
+ +R SF IG ++EP KR L + +L + PLP
Sbjct: 141 YCVRQSFGEIGEKETEPREGTKRPLLPRYAKLQFYPLP 178
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 214 VNQWGQQNVHFSQCLPNLYGLPC 146
++ W + QCLP G PC
Sbjct: 724 ISTWKPNESYLDQCLPEFGGYPC 746
>03_05_0049 -
20277234-20277251,20277670-20277795,20278085-20278153,
20278233-20278280,20278413-20278494,20278583-20278662,
20278764-20278835,20278912-20279006,20280396-20280477,
20280604-20280963
Length = 343
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 290 NSGPTPSPGIRVHLIRPSFCRIGLQSEPMGAAKRTFLSVFTELVWTPLPMCCD 132
+SG +P R+++ P F + PM AA + S F +L + + + D
Sbjct: 25 SSGECSTPPFRLNVHAPEFVPRSPAASPMAAAAAGYYSPFLQLPGSSIGLGAD 77
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 203 GAAKRTFLSVFTELVWTPLPMCCDPCTRARKTFRLISDILKICQIPL 63
G K+ LSV TE +P + + R + ILK C+I L
Sbjct: 888 GPTKKAVLSVLTEACRVKVPHNPEKPRKERNAISISEAILKKCRIAL 934
>08_02_0308 + 15617044-15617173,15618342-15618757
Length = 181
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 LVQGSQ-HIGKGVHTSSVNTERNVRFAAPIGSLCNPMRQKEGRIKCTLIPGDGVGPE 288
LV G + H G S + N+ +G LC+ + EG + L PG + E
Sbjct: 63 LVSGREKHYVGGSEAMSYLDQDNIPLPEIVGHLCDHCKVAEGTMLHLLFPGKDLNSE 119
>04_01_0260 - 3506672-3508981
Length = 769
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 67 GIWQILRMSLISRNVFRALVQGS 135
G W++LR ++S N+FR LV +
Sbjct: 352 GKWRMLRRFILSLNLFRFLVNSN 374
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 221 LQSEPMGAAKRTFLSVFTELVWTPLPMCCDPCTRARKTFRLISDIL 84
L+ + + +AKR V++ +W+ LP CC+ FR + ++L
Sbjct: 541 LKEDKLFSAKRAEGYVYS--LWSLLPSCCNYARDTSIHFRALQNVL 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,967,666
Number of Sequences: 37544
Number of extensions: 173126
Number of successful extensions: 365
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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