Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C14
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   1.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   5.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   9.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   9.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   9.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +1

Query: 67  GIWQILRMSLISRNVFRALVQGSQHIGKGVHTSSVNTERNVRFAAPI 207
           G++ +LR +    N++   +   +H+ + V +   N E  +RF  P+
Sbjct: 620 GLYHVLRGN---ENIYSGKLISMRHLKEEVSSIETNYECGLRFEDPM 663


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 VNTERNVRFAAPIGSLCNPMR 231
           + TE++++F   +G  C P +
Sbjct: 261 LKTEKDIKFGDKVGPACLPFQ 281


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 58  KANFYKKYFWTVFALQ 11
           K+N + ++ WT + LQ
Sbjct: 74  KSNVWLRFIWTDYQLQ 89


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 114 SCPCTGITTHRQGS 155
           SCP   +TT R G+
Sbjct: 617 SCPSPPVTTKRDGT 630


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -1

Query: 182 LSVFTELVWTPLPMCCDPCTRARKTFRLISDILKICQIPLEKG*FLQEIFLDRL 21
           L  F +  W  +  C       R     I  +L+  Q   ++   LQE+  D+L
Sbjct: 824 LPSFDDECWRLMEQCWSGEPSKRPLLGAIVPVLESIQQKAKRSKSLQEVSSDKL 877


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -1

Query: 182  LSVFTELVWTPLPMCCDPCTRARKTFRLISDILKICQIPLEKG*FLQEIFLDRL 21
            L  F +  W  +  C       R     I  +L+  Q   ++   LQE+  D+L
Sbjct: 862  LPSFDDECWRLMEQCWSGEPSKRPLLGAIVPVLESIQQKAKRSKSLQEVSSDKL 915


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 214 VNQWGQQNVHFSQCLPNLYGLP 149
           +N  G   VHF     +LYG P
Sbjct: 1   MNYKGSGKVHFGVDDVSLYGTP 22


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 214 VNQWGQQNVHFSQCLPNLYGLP 149
           +N  G   VHF     +LYG P
Sbjct: 1   MNYKGSGKVHFGVDDVSLYGTP 22


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 85  LKFAKYL*KKANFYKKYF 32
           L F+KY  KK NF+   F
Sbjct: 370 LLFSKYDAKKRNFFITMF 387


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 214 VNQWGQQNVHFSQCLPNLYGLP 149
           +N  G   VHF     +LYG P
Sbjct: 1   MNYKGSGKVHFGVDDVSLYGTP 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,624
Number of Sequences: 438
Number of extensions: 1761
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)