Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C13
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    70   2e-13
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    70   2e-13
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    30   0.16 
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   0.84 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.5  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   7.8  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   7.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   7.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   7.8  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 42/60 (70%)
 Frame = -3

Query: 316 QTPANTQYQTGFSTRQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
           Q P+  +  + F  RQKDI DGK   L ++N+ SKLREDLERLKKI+ HRG+RH   LRV
Sbjct: 72  QNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRV 131



 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 30/46 (65%), Positives = 34/46 (73%)
 Frame = -2

Query: 404 IVLTKADIDLDKRAGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTK 267
           IV  KADID+ KRAGE T EE  +IVTI+ NPSQ+ IP WFLN  K
Sbjct: 43  IVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQK 88


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 42/60 (70%)
 Frame = -3

Query: 316 QTPANTQYQTGFSTRQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
           Q P+  +  + F  RQKDI DGK   L ++N+ SKLREDLERLKKI+ HRG+RH   LRV
Sbjct: 72  QNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRV 131



 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 30/46 (65%), Positives = 34/46 (73%)
 Frame = -2

Query: 404 IVLTKADIDLDKRAGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTK 267
           IV  KADID+ KRAGE T EE  +IVTI+ NPSQ+ IP WFLN  K
Sbjct: 43  IVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQK 88


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 226 NLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
           +L  +   D+ RL  IR +RGMRH  GL V
Sbjct: 68  DLRRQRNADISRLVNIRCYRGMRHVNGLPV 97


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 354 H*RRSCKNCYNH---VKPQPIHNTRLVSQHD 271
           H + SC+ C  H   VKP+PI   R++S  D
Sbjct: 227 HMQFSCQPCERHRDLVKPRPIEEKRILSTQD 257


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 193 FPNLHEAWSVNWKKSSGCICHQQYPFVV 276
           F NL+  + + W++   C C  QYPF++
Sbjct: 368 FINLYHDFEL-WEQKINCFCFCQYPFLL 394


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 82  WTHQQFYLFCLWS*CVDHGHADP-SSDAYPYEHGSSSAFPNLHEAWSVNWKK 234
           + +Q   +FC+W+ C++    +P  S  Y +E G        H   S+  KK
Sbjct: 38  YRNQLIRVFCVWA-CIELHSINPWYSGMYTFETGRLLVLKQRHRVLSMELKK 88


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 177 RIFFSLSKSSRSLECKLEEVKWLYLPS 257
           RIF  L  S ++++ +L  ++W++L S
Sbjct: 163 RIFSDLQFSQKTVDYRLSLLRWIHLSS 189


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 WKKSSGCICHQQYPFVVLRNQ 288
           W+K+   I  ++YP + L+NQ
Sbjct: 201 WRKTVAKIFKEEYPHLTLKNQ 221


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 130 DHGHADPSSDAYPYEHGSSSAFPNLHEAWSVNWKKSSGCICHQQYPFVVLRNQSGIVYWL 309
           D G    S +  P+    S+  PN   + S+ W  SSG   +Q  PF V R        +
Sbjct: 120 DFGALYASLNTTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQN-PFFVRRQSQSSTSPV 178

Query: 310 GFDMIVTIFAASSSV 354
              +   + +A SSV
Sbjct: 179 SDSVDENLLSAVSSV 193


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 262 IVDGKYSHLTSSNLHSKLRED 200
           I DGK   + + N+HS +R+D
Sbjct: 385 IYDGKDVSMVNDNMHSDVRQD 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,156
Number of Sequences: 5004
Number of extensions: 25569
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)