Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C13
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 74 5e-14
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 74 5e-14
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 74 5e-14
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 72 2e-13
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 31 0.35
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.35
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 28 2.4
07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540 27 5.6
09_01_0106 + 1673737-1674522,1674625-1675089 27 7.5
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 26 9.9
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 73.7 bits (173), Expect = 5e-14
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -3
Query: 283 FSTRQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
F R+KD DG++S + S+ L KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 79 FLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 127
Score = 65.3 bits (152), Expect = 2e-11
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = -2
Query: 404 IVLTKADIDLDKRAGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTKGY 261
I KADID++KRAGE T EE +++T+++NP Q+ +PDWFLN K Y
Sbjct: 39 IACKKADIDMNKRAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDY 86
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 73.7 bits (173), Expect = 5e-14
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -3
Query: 283 FSTRQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
F R+KD DG++S + S+ L KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 99 FLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 147
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -2
Query: 365 AGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTKGY 261
AGE T EE +++T+++NP Q+ +PDWFLN K Y
Sbjct: 72 AGELTPEELERLMTVVANPRQFKVPDWFLNRKKDY 106
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 73.7 bits (173), Expect = 5e-14
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -3
Query: 283 FSTRQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
F R+KD DG++S + S+ L KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 101 FLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -2
Query: 365 AGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTKGY 261
AGE T EE +++T+++NP Q+ +PDWFLN K Y
Sbjct: 74 AGELTPEELERLMTVVANPRQFKVPDWFLNRKKDY 108
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 72.1 bits (169), Expect = 2e-13
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = -3
Query: 274 RQKDIVDGKYSHLTSSNLHSKLREDLERLKKIRAHRGMRHYWGLRV 137
R+KD DG++S + S+ L KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 12 RKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 380 DLDKRAGECTEEEAAKIVTIMSNPSQYTIPDWFLNTTKGYC*WQIQPLDFFQF 222
D + R E EE ++ +I N + D NTT YC +++P+ +F
Sbjct: 1033 DQNPREAEMIEEAPVQLFSITQNQEMRDVEDTNRNTTNDYCVKRLEPVIGMEF 1085
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -3
Query: 208 REDLERLKKIRAHRGMRHYWGLRV 137
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 401 VLTKADIDLDKRAGECTEEEAAKIVTIMSNPSQYTIPDWFLNTT 270
V K D L AG +EAAK + + + + + +P W +N T
Sbjct: 86 VFAKVDPGLSSYAGR--PQEAAKSIMPLLDRANHAVPTWLMNKT 127
>07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540
Length = 451
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 380 DLDKRAGECTEEEAAKIVTIMSNPSQYTI 294
D D+++ E + + + V M NPSQYTI
Sbjct: 57 DEDEQSDEMNIDPSIQFVVNMRNPSQYTI 85
>09_01_0106 + 1673737-1674522,1674625-1675089
Length = 416
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 133 HGHADPSSDAYPYEHGSSSA 192
HGH D SS +P E G SSA
Sbjct: 70 HGHVDGSSRQHPSELGFSSA 89
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 217 SVNWKKSSGCICHQQYPFVV------LRNQSGIVYWLGFDMIVTIFAASSSVHSPARLSR 378
S + K C+ H YP+++ +R ++ + D +V AASS+ A L R
Sbjct: 817 SCSGNKFQSCVFHPSYPYLLSLELWDIREKNAMTVHSAHDGLVAALAASSATGKVASLYR 876
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,542
Number of Sequences: 37544
Number of extensions: 161818
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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