Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C11
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 243 1e-65
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 243 1e-65
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 243 1e-65
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 68 7e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.004
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.97
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 2.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 2.2
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.2
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.2
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 9.0
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 24 9.0
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 243 bits (594), Expect = 1e-65
Identities = 106/144 (73%), Positives = 125/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 270 IKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKN 329
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++P
Sbjct: 330 DPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESP 389
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA I +VPSKP+CVE+F
Sbjct: 390 KFVKSGDACIAKMVPSKPMCVEAF 413
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 243 bits (594), Expect = 1e-65
Identities = 106/144 (73%), Positives = 125/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 270 IKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKN 329
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++P
Sbjct: 330 DPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESP 389
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA I +VPSKP+CVE+F
Sbjct: 390 KFVKSGDACIAKMVPSKPMCVEAF 413
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 243 bits (594), Expect = 1e-65
Identities = 106/144 (73%), Positives = 125/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 270 IKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKN 329
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++P
Sbjct: 330 DPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESP 389
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA I +VPSKP+CVE+F
Sbjct: 390 KFVKSGDACIAKMVPSKPMCVEAF 413
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.7 bits (158), Expect = 7e-13
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 185
+K + V+ P N T EV ++ + E + ++ GD V V+ +++ GYV +K
Sbjct: 493 IKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTK 551
Query: 186 NNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDN 365
N P F AQ+ +L P ++ GY+ V+ HTA FA++ K+D +T + ++
Sbjct: 552 N-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKP 609
Query: 366 PKSIKSGDAAIVNLVPSKPLCVESF 440
P G I L P+C+E F
Sbjct: 610 PMFATKGMKIIAELETQTPVCMERF 634
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.5 bits (78), Expect = 0.004
Identities = 27/131 (20%), Positives = 56/131 (42%)
Frame = +3
Query: 42 ANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTA 221
+++ T V +EM + L AV GDN G ++++ ++L+RG + P F A
Sbjct: 292 SHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPH--QKFKA 349
Query: 222 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 401
+L + T +D + + + +++ ++ T D+ K + GD +
Sbjct: 350 SFYILTK--EEGGRRTGFVDKYRPQLYSRTSDVTVEL---THPDPNDSDKMVMPGDNVEM 404
Query: 402 NLVPSKPLCVE 434
P+ +E
Sbjct: 405 ICTLIHPIVIE 415
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.97
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 397 MAASPDLMDLGLSSVDLPVRRSTFS 323
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 197 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 337
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 76 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 207
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 418 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 257
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 382 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 263
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 341 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 240
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +1
Query: 106 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 285
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 286 TQPT*PAN 309
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 322 LISANLQAMWAVWQSNTGV 266
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 234 LNHPGQISNGYTPVLDCHTAHIACK 308
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 131 DVETNIVTGYSFL*SLVVHFHGLDFSS 51
DV N VTG F S+ + H LD S
Sbjct: 57 DVTLNKVTGVDFANSIFEYVHSLDSDS 83
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 170 NVTTAQFLDRYVFDVETNIVTGYS 99
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,303
Number of Sequences: 5004
Number of extensions: 40994
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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