Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C11
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 244 2e-65
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 244 2e-65
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 244 2e-65
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.001
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 0.86
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 0.86
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 0.86
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 0.86
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 0.86
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 1.1
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.1
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 1.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 1.5
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 1.5
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 2.6
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 2.6
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 2.6
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 2.6
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 6.0
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 27 6.0
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 6.0
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 6.0
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 6.0
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 6.0
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 8.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 244 bits (598), Expect = 2e-65
Identities = 111/144 (77%), Positives = 124/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK
Sbjct: 238 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 297
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED P
Sbjct: 298 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 357
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA IV L+P+KPLCVESF
Sbjct: 358 KFLKSGDAGIVELIPTKPLCVESF 381
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 244 bits (598), Expect = 2e-65
Identities = 111/144 (77%), Positives = 124/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK
Sbjct: 272 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 331
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED P
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 391
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA IV L+P+KPLCVESF
Sbjct: 392 KFLKSGDAGIVELIPTKPLCVESF 415
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 244 bits (598), Expect = 2e-65
Identities = 111/144 (77%), Positives = 124/144 (86%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK
Sbjct: 272 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 331
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
+P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED P
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 391
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +KSGDA IV L+P+KPLCVESF
Sbjct: 392 KFLKSGDAGIVELIPTKPLCVESF 415
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 57.6 bits (133), Expect = 4e-09
Identities = 36/144 (25%), Positives = 66/144 (45%)
Frame = +3
Query: 9 LKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 188
++ G +V P +V + + V GDN+ F +K + EL+ G++ +
Sbjct: 364 VQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDS 423
Query: 189 NPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNP 368
G F A+V+VL H I++GY+ VL +A + +D++TG+ +
Sbjct: 424 LAKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGE--KKRA 480
Query: 369 KSIKSGDAAIVNLVPSKPLCVESF 440
K +K + I+ L +P +E F
Sbjct: 481 KFVKQDEKCIMRLESPEPFVLEPF 504
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 39.1 bits (87), Expect = 0.001
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 60 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 239
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 240 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 347
HP I Y +L + + ++V RTG
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTG 513
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 0.86
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -2
Query: 226 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 47
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 46 LAGAKTTTVP 17
+ T+T+P
Sbjct: 528 TTTSTTSTLP 537
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 278 GLPHSPHSLQICRNQRESRPSYW*INR 358
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 0.86
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 48 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 170
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.86
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 48 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 170
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.86
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 48 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 170
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.5 bits (63), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -2
Query: 178 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 20
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 19 PGF 11
PG+
Sbjct: 164 PGY 166
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 12 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 137
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 310 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWS 435
LPK+ T V + TT+ P +PP +T PP +S
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPPITTTYS 305
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -2
Query: 178 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 20
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 19 PGF 11
PG+
Sbjct: 164 PGY 166
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -2
Query: 178 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 20
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 19 PGF 11
PG+
Sbjct: 164 PGY 166
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -2
Query: 178 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 20
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 19 PGF 11
PG+
Sbjct: 164 PGY 166
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 60 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 239
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLC 508
Query: 240 H 242
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 276 LDCHTAHIACKFAEIKEKVDRRTGKSTE 359
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 276 LDCHTAHIACKFAEIKEKVDRRTGKSTE 359
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 276 LDCHTAHIACKFAEIKEKVDRRTGKSTE 359
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 183 KNNPPRGAAD-FTAQVIVLNHP 245
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 183 KNNPPRGAAD-FTAQVIVLNHP 245
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 33 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK--NNPPRGA 206
F P E+ S+ + QE+ + GF+ +N + R G GDS ++PP
Sbjct: 21 FPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLGDSSSDSSPPLSC 79
Query: 207 ADFT 218
A+FT
Sbjct: 80 ANFT 83
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 193 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 282
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 66 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 185
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 66 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 185
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 145 TDTFLTLKPTLSPGTASCRASWCISTD 65
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 312 AEIKEKVDRRTGKSTEDNPKS 374
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 93 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 203
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 156 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 254
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,258
Number of Sequences: 27780
Number of extensions: 256197
Number of successful extensions: 817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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