Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C10
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0005 + 10502478-10503446                                         27   3.1  
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774     27   3.1  
06_01_0036 + 364316-365758                                             26   4.1  
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584...    26   4.1  
03_06_0729 - 35771936-35772050,35772469-35772995                       26   4.1  

>06_02_0005 + 10502478-10503446
          Length = 322

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 164 AVLGRPRVGMVLVGSGW 114
           AVLG P VG+ L  SGW
Sbjct: 203 AVLGHPAVGLFLSHSGW 219


>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
          Length = 187

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 26  LVLSDASGHGPVVRPVVCAALPAAVG 103
           L LS +S HGP   P +    PAA G
Sbjct: 3   LRLSVSSSHGPASSPAISTCRPAACG 28


>06_01_0036 + 364316-365758
          Length = 480

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 103 DTSNHPDPTSTIPTRGRPSTA 165
           D+S  P+PTS +  R  PST+
Sbjct: 20  DSSKSPEPTSVLYNRSSPSTS 40


>04_01_0450 -
           5840015-5840055,5840635-5840977,5841326-5841537,
           5842381-5842477
          Length = 230

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 54  PWPLASDSTSCCCP 13
           PWPL+S     CCP
Sbjct: 162 PWPLSSVERGACCP 175


>03_06_0729 - 35771936-35772050,35772469-35772995
          Length = 213

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 41  ASGHGPVVRPVVCAALPAAVGIPA 112
           A+G  P   PVVC AL A +G  A
Sbjct: 125 AAGTKPTAPPVVCGALRALIGAVA 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,558,941
Number of Sequences: 37544
Number of extensions: 75403
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)