Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C10
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.42 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   3.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   6.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.42
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 100  GDTSNHPDPTSTIPTRGRPSTANY--Y*PKTSPSLS*QGGQRDECL*RIVAIVF*DVLRK 273
            G +S + +PTS    +G  + A+      + SP+ S      +  + + VA+ F DV+ K
Sbjct: 894  GCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFRDVIAK 953

Query: 274  VIS 282
             IS
Sbjct: 954  SIS 956


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 241 RYVIDIRPFDLLVKTRRGRFWVNSSW 164
           RY   I+P  L    +RG+  ++ +W
Sbjct: 136 RYYAVIKPLQLWDVDKRGKIMLSFAW 161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 208  LVKTRRGRFWVNSS 167
            L KTRR  FWV +S
Sbjct: 1242 LDKTRRYDFWVTAS 1255


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 3   FGTRGNNSSYYQTPAATAQSYDQS 74
           FG     SS  Q P +   SYD S
Sbjct: 47  FGVENTISSVPQPPRSLEGSYDSS 70


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 12  RGNNSSYYQTPAATAQSYDQ 71
           RGN      T   T QSYD+
Sbjct: 99  RGNEQRCTVTMHGTVQSYDK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,616
Number of Sequences: 438
Number of extensions: 680
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)