Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C09
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   0.35 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   2.4  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    24   4.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   5.6  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    23   7.5  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   7.5  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    23   7.5  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    23   9.9  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    23   9.9  

>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 66  KCRLTKVRDNNPITSSFCVIKSSRGSQWRI 155
           KCR     DNN +   FCV   S GSQ ++
Sbjct: 2   KCRALYSHDNNILIFGFCVQIMSAGSQTKL 31


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 217 KRIGLVVQEKSISVIHSHTVGILHCDPLDDLITQKLDVIG 98
           K +  + Q  S++V HS    I++CD L+ L+   + + G
Sbjct: 150 KGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITG 189


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 208 GLVVQEKSISVIHSHTVGILHCDPLDDLIT 119
           G +++   +   H++  GI+ CD L+ +IT
Sbjct: 43  GTLLEIFKVPKAHTNITGIISCDQLNGVIT 72


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 ITMENSYGVGVDNRYALFLDDESDPLDAIK 229
           + + N  G   D    +F+DD  +P D++K
Sbjct: 690 LAVSNGKGESSDAIICVFVDDVGEPTDSLK 719


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 37  ILNEINKIKQNVAL 78
           ILN +N IKQNV L
Sbjct: 249 ILNNLNLIKQNVGL 262


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 171 WITDMLFSWTTSPILLM 221
           WI  ++ +W+ SP +L+
Sbjct: 474 WIVQIVIAWSVSPFVLL 490


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 181 SVIHSHTVGILHCDPLDDLITQKLDVIGLLS 89
           ++ H H   ++  + + D I +  D IGL S
Sbjct: 247 TLAHQHEAAVVIANQVSDRIPRDYDAIGLFS 277


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 64  QNVALLKCVIIIQ*HLVFV*LNHQEDHNGEFLRCGSG*QICSFLGRR 204
           + V  L+CV+I+    + V    Q     E+   G+G Q+C++ G++
Sbjct: 201 RTVPRLRCVVIVPTRELTV----QVAKTFEYYMSGAGLQVCAWTGQK 243


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 120 VIKSSRGSQWRIPTVWEW 173
           V++ + G  W  PT+ EW
Sbjct: 8   VVRKAGGQVWEDPTLLEW 25


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 166 HTVGILHCDPLDDLITQKLDVIGLLSRTLV 77
           H    L+  PLD  I  K+D +G L   +V
Sbjct: 482 HFQASLYHRPLDGFIISKVDTVGQLVGVMV 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,328
Number of Sequences: 5004
Number of extensions: 18227
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)