Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C09
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045           27   3.7  
07_03_0989 + 23161020-23161412                                         26   4.9  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    26   4.9  
04_04_1429 - 33534021-33534427,33537697-33537862,33539299-335394...    25   8.6  
03_01_0147 - 1170481-1171260,1171332-1171511                           25   8.6  
01_07_0275 + 42434082-42435152                                         25   8.6  

>02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045
          Length = 242

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 214 RIGLVVQEKSISVIHSHTVGILHCDPLDD 128
           RI LV Q ++  +  +HT+GI HC    D
Sbjct: 84  RITLVNQIQTTLLACAHTIGIAHCSSFAD 112


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 123 IKSSRGSQWRIPTVWEW 173
           +K  + ++W+ P  WEW
Sbjct: 11  VKVEKENEWKTPATWEW 27


>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -1

Query: 210 SDSSSKKRAYLLST 169
           +DSSS+KR+YLLST
Sbjct: 558 ADSSSEKRSYLLST 571


>04_04_1429 -
           33534021-33534427,33537697-33537862,33539299-33539496,
           33539568-33539810
          Length = 337

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 202 VVQEKSISVIHSHTVGILHCD 140
           + Q   I++  +HT+G+ HCD
Sbjct: 193 LTQTDMIALSGAHTIGVTHCD 213


>03_01_0147 - 1170481-1171260,1171332-1171511
          Length = 319

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 202 VVQEKSISVIHSHTVGILHCDPLDD 128
           + QE+ +++  +HTVG  HC    D
Sbjct: 170 LTQEEMVTLSGAHTVGRAHCTSFSD 194


>01_07_0275 + 42434082-42435152
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 184 ISVIHSHTVGILHCDPLDDLITQKLD 107
           +++  +HTVGI HC   D  +  ++D
Sbjct: 200 VALSGAHTVGIAHCTSFDKRLFPQVD 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,779
Number of Sequences: 37544
Number of extensions: 112773
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)