Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C09
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U61951-1|AAB03157.2|  530|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 190 KSISVIHSHTV--GILHCDPLDDLITQK 113
           K+I+  HS T   G+LH DPLD ++ QK
Sbjct: 525 KAIATCHSLTRINGVLHGDPLDLILFQK 552


>U61951-1|AAB03157.2|  530|Caenorhabditis elegans Hypothetical
           protein C48A7.2 protein.
          Length = 530

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 162 VWEWITDMLFSWTTSPIL 215
           VWE I  + FSW  SP+L
Sbjct: 147 VWEKIYRIFFSWIISPLL 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,903,676
Number of Sequences: 27780
Number of extensions: 99568
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)