Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C08
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 33 0.005
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 33 0.005
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.20
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 1.9
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 24 4.3
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.3
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 23 5.7
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 23 5.7
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 23 5.7
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 23 5.7
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 23 5.7
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 23 7.5
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 23 7.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 23 7.5
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 23 9.9
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 23 9.9
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 23 9.9
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 23 9.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 23 9.9
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.005
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 145 IKLFGRWSCYDVQVSDMSLQDYISVKEKCAKY*PHSAGRY 264
IKLF ++ V+V D+SL DYI++ + PH+AGR+
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRF 55
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.005
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 145 IKLFGRWSCYDVQVSDMSLQDYISVKEKCAKY*PHSAGRY 264
IKLF ++ V+V D+SL DYI++ + PH+AGR+
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRF 55
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.20
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 204 LQRHVRYLNVITTPSPKKFDFGNISRLW 121
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 1.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 74 KKSPTRAAWLWTTCHYHSRLIF 139
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 240 IFCTLLFYRNIILQRHVRYLN 178
I C L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 23.8 bits (49), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 207 ILQRHVRYLNVITTPSPKKFDFGNISRL 124
IL++ + +I S +KFDF N R+
Sbjct: 3 ILEKKNIFFKIIHIKSSRKFDFSNAIRI 30
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 5.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 5.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 5.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 222 FYRNIILQRHVRYLNVITTPSPKKF 148
FY I Q H Y++ TPS +F
Sbjct: 57 FYMKTIDQFHEMYISAYVTPSNMRF 81
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 148 KLFGRWSCYDVQVSDMSLQDYISVKEKCAKY 240
KLF Y V DM+ +I + +KC ++
Sbjct: 569 KLFEFMHEYHEGVQDMACDTFIKIAQKCRRH 599
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 237 FCTLLFYRNIILQRHVRYLNV 175
FC F R+ +L RHV+ +++
Sbjct: 60 FCNRAFARSDVLNRHVQQMHL 80
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 55 AEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWS 168
+ E W E+ ++ + P P+ PE+ F W+
Sbjct: 213 SSEGWPSELRLTSS-IIQTLGTPNPSMWPELSTFPDWN 249
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 172 YDVQVSDMSLQDYISVKEKCAKY 240
Y VSD +++S K +C KY
Sbjct: 159 YITGVSDTKWLEFVSAKGQCPKY 181
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 69 PVLLSHISHFYSQFTNYN 16
P+ +S ISHFY +YN
Sbjct: 124 PLHISVISHFYPCLQSYN 141
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 249 MWSIFCTLLFYRNIILQRHVRY 184
+WS+ L F +N L RH ++
Sbjct: 291 LWSLLVWLPFTKNTALGRHAQF 312
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 22.6 bits (46), Expect = 9.9
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +2
Query: 92 AAWLWTTCHYHSRL 133
A WL++ C+Y+ R+
Sbjct: 107 APWLYSECYYYRRI 120
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 244 VNILHTSLLPKYNPAKTC 191
VN ++T +LP PA++C
Sbjct: 122 VNKVYTEVLPDPKPARSC 139
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 244 VNILHTSLLPKYNPAKTC 191
+ ILH S+L + NP + C
Sbjct: 489 LEILHRSVLSRLNPLRYC 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,590
Number of Sequences: 5004
Number of extensions: 22052
Number of successful extensions: 74
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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