Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C08
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 56 5e-09
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 51 1e-07
03_01_0548 + 4099386-4099847,4100435-4101316 28 0.89
03_01_0547 + 4093196-4093657,4094267-4095148 28 0.89
03_01_0544 + 4082528-4082989,4083585-4084466 28 0.89
03_01_0543 + 4076981-4077442,4078145-4079026 28 0.89
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 27 1.6
10_02_0110 - 5371536-5372882 27 2.7
07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501 26 3.6
05_03_0329 - 12473778-12473956,12474190-12474250 26 3.6
08_01_0474 - 4173245-4174195 26 4.7
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943... 25 6.3
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 25 8.3
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 55.6 bits (128), Expect = 5e-09
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +1
Query: 142 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKCAKY*PHSAGRYA 267
E+KLF RWS DVQV+D+SL DY++V K A Y PH+AGRY+
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYS 52
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 145 IKLFGRWSCYDVQVSDMSLQDYISVKE-KCAKY*PHSAGRYA 267
+KLF WS DVQV+D+SL DY++V K A Y PH+AGRY+
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYS 53
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 243 SIFCTLLFYRNIILQRHVRYLNVITTPSPKKFDFGNISRLW 121
S F +LF R+++ +RH Y ++ +KFD + +W
Sbjct: 504 SSFREVLFARDMLPERHDDYHTMLRFLKARKFDVEKAAHMW 544
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 67 WTEEVADAGGMVVDNMPLPQPADIPEIKL 153
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501
Length = 283
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 73 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSD 192
E +AGG V + P PA + +I GRWS Y +++
Sbjct: 4 EADVEAGG--VRDYEDPPPAPLVDIDELGRWSLYRAVIAE 41
>05_03_0329 - 12473778-12473956,12474190-12474250
Length = 79
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 98 WLWTTCHYHSRLIFPKSNFLGDGVVMTFKYRTCL 199
W W C+ + +F + DG V F+ R C+
Sbjct: 25 WNWIICYSSASSVFAALDKDNDGKVSAFELRGCM 58
>08_01_0474 - 4173245-4174195
Length = 316
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 70 TEEVADAGGMVVDNMPLPQPADIPEIKLFGR 162
+EE A A D+M P DIPE+ F R
Sbjct: 158 SEEEAAAAAAAFDDMGTPAARDIPEVTGFVR 188
>08_01_0951 -
9436319-9436372,9436536-9436622,9436700-9436728,
9437447-9438044
Length = 255
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 124 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKC 231
+P + ++ G+WS Y Q D S + +S +KC
Sbjct: 96 KPLFLRIVEALGQWSPYFTQREDCSSRTSLSPPQKC 131
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 22 IRKLRIKV*NMAEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSL 201
+++ +K ++W + VADAGG++ + + Q P L+ + V S
Sbjct: 1655 LQQTAVKALESISQSWPKAVADAGGILELSKVIVQDDPQPSQALWDSAALVLCNVLRYSS 1714
Query: 202 QDYISV 219
+Y+ V
Sbjct: 1715 DNYVQV 1720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,446,724
Number of Sequences: 37544
Number of extensions: 145189
Number of successful extensions: 433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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