Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C08
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.22 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.29 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   0.29 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   2.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   6.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   6.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   8.2  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    19   8.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   8.2  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    19   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.22
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQFTN 22
           +V NH  ++ + + PVL  H +H   +F +
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFAD 374


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.29
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKF 372


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 0.29
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 VVHNHAARVGDFFGPVLLSHISHFYSQF 28
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 56  IVLNHPGQISNGYTPVLDCHTAHIACKF 83


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 219 YRNIILQRHVRYLNVITTPSPKKFDFGN 136
           Y N  L  ++ Y+  I  P P    +GN
Sbjct: 321 YNNKKLYYNINYIEQIPVPVPVPIYYGN 348


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -3

Query: 264 VPASRMWSIFCTLLFYRNII 205
           + AS +W + CT+  +  ++
Sbjct: 291 IKASEIWFLGCTIFLFAAMV 310


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 139 PEIKLFGRWSCYDVQVSDMSLQDYISVKEKCAK 237
           P I  +  WS  DV+  D     Y    +KC +
Sbjct: 101 PLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGR 133


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 VVNILHTSLLPKYNPAKTCPIL 182
           V N+L    +P+ +PA T   L
Sbjct: 85  VANLLRLFHIPQISPASTAKAL 106


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 169 CYDVQVSDMSLQDYISVK 222
           C  + VSD+S +  ISVK
Sbjct: 14  CVAMLVSDVSAKTSISVK 31


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 58 EENWTEEVA 84
          E+NW +EVA
Sbjct: 2  EQNWIDEVA 10


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 169 CYDVQVSDMSLQDYISVK 222
           C  + VSD+S +  ISVK
Sbjct: 14  CVAMLVSDVSAKTSISVK 31


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 VVNILHTSLLPKYNPAKTCPIL 182
           V N+L    +P+ +PA T   L
Sbjct: 175 VANLLRLFHIPQISPASTAKAL 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,844
Number of Sequences: 438
Number of extensions: 1581
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)