Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C07
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274...    26   3.6  
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    26   3.6  
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116     26   4.8  
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242...    25   6.4  

>07_03_0363 +
           17225472-17226778,17226910-17226917,17227313-17227488,
           17227822-17227882,17227955-17228053,17228155-17228249,
           17228411-17228482,17228668-17228735,17228934-17229390,
           17229486-17229596
          Length = 817

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 90  RKRPWSAAQGCSTTQERCSFY*RG 161
           R R W A  GCS   ERC    +G
Sbjct: 561 RSRAWGAGIGCSFRIERCCIVKKG 584


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/42 (23%), Positives = 14/42 (33%)
 Frame = -2

Query: 126 CCILALPTTASSFNWCTLALGXXXXXXXXXXXXXXSYRCPSC 1
           CC   +P   ++ N C L +                  CPSC
Sbjct: 439 CCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPSC 480


>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
          Length = 886

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 112 AADHGLFLQLVHSCPWQTFS 53
           AA+HG F++     PW+T +
Sbjct: 655 AAEHGYFIRWSRDAPWETMA 674


>09_04_0017 +
           13821348-13823404,13823546-13823819,13823916-13824238,
           13824491-13824604,13825357-13825422,13825638-13825764
          Length = 986

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 112 AADHGLFLQLVHSCPWQT 59
           AA+HG FL+L     W+T
Sbjct: 678 AAEHGYFLRLKRDAEWET 695


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,393,095
Number of Sequences: 37544
Number of extensions: 48553
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)