Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C06
         (296 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   2.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   2.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   2.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   4.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    19   8.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    19   8.5  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  LLLTWWVEPRK*SSPHQVLML 120
           +++T++ +  + S PHQ+L L
Sbjct: 114 IMITFYRDEPRFSQPHQILTL 134


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  LLLTWWVEPRK*SSPHQVLML 120
           +++T++ +  + S PHQ+L L
Sbjct: 274 IMITFYRDEPRFSQPHQILTL 294


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  LLLTWWVEPRK*SSPHQVLML 120
           +++T++ +  + S PHQ+L L
Sbjct: 274 IMITFYRDEPRFSQPHQILTL 294


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 257 DDCSACHYC 283
           DDCS  +YC
Sbjct: 432 DDCSIFYYC 440


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 203 PRTPRKGHPR 232
           P  PR GHP+
Sbjct: 71  PSVPRLGHPQ 80


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 78  HPPSEQKLYQWL 43
           HP S Q L +W+
Sbjct: 259 HPASTQSLSRWI 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,302
Number of Sequences: 336
Number of extensions: 1609
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)