Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C06
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 159 1e-40
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 153 4e-39
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 4.2
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 24 4.2
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 24 5.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 23 7.3
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 23 7.3
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 23 9.6
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 23 9.6
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 23 9.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 23 9.6
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 159 bits (385), Expect = 1e-40
Identities = 77/96 (80%), Positives = 84/96 (87%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNAS 188
AEYV+ESTGVFTT + ASAHL GGAK+VIISAPS DAPMFVVGVNLE ++PS KVISNAS
Sbjct: 92 AEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNAS 151
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
CTTNCLAPLAKVI+D F I +G MT VHATTATQ T
Sbjct: 152 CTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKT 187
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 153 bits (372), Expect = 4e-39
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNAS 188
A+YV+ESTGVFTT + ASAHL GGAK+VIISAPS DAPM+VVGVN E ++PS KVISNAS
Sbjct: 92 ADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNAS 151
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
CTTNCLAPLAKVI+D F I +G MT VHATTATQ T
Sbjct: 152 CTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKT 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.2 bits (50), Expect = 4.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 56 SFCSLGGWSQESNH 97
++C+L GWSQ S +
Sbjct: 901 TYCNLSGWSQSSRY 914
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 52 SVVVNTPVDSTTYS 11
S +VNTP DSTTY+
Sbjct: 87 SSLVNTPRDSTTYA 100
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 23.8 bits (49), Expect = 5.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = -1
Query: 176 NNFVGRIV-GFQVDTNYK----HGSISTWCGDDYFLGSTHQVSRSFISGCEHT 33
N GR + G+ +D Y H S STWC D + VSR FI H+
Sbjct: 182 NPTAGRSLRGWAIDAKYVAENIHSSASTWCFADE--ETRKWVSRLFIQRVLHS 232
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 7.3
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +3
Query: 225 IHDNFEIIDGWM 260
+HD+F+++D W+
Sbjct: 12 LHDDFKVVDSWI 23
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 156 DPSYKVISNASCTTNCLA 209
DP Y ++N SC T LA
Sbjct: 18 DPDYVNVNNGSCGTESLA 35
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 233 VVDDLCEGCE 204
V+D+LCE CE
Sbjct: 53 VIDELCEACE 62
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 119 SISTWCGDDYFLGSTHQ 69
+I WCGD F+ S +Q
Sbjct: 225 NIYEWCGDSDFVSSGYQ 241
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 268 TAVIQPSIISKLSWMTFARGARQLVVQE 185
T I+P + S+++W F + + +VQE
Sbjct: 380 TEEIKPVVYSQVTWTEFEKKLLRYLVQE 407
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 295 VFWVAVVACTAVIQPSIISKLSWMTFARGARQL 197
++ VAV CT +I+ + LS FA RQ+
Sbjct: 332 LYQVAVRCCTKLIEQASHFNLSEKLFALAVRQI 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,929
Number of Sequences: 5004
Number of extensions: 25615
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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