Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C06
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 165 7e-42
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 160 2e-40
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 152 5e-38
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 151 7e-38
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 134 9e-33
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 105 8e-24
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 93 4e-20
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 29 0.49
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 27 2.6
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684 26 4.6
12_02_0766 - 22982606-22983288,22984352-22984706 25 8.0
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 25 8.0
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 25 8.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 25 8.0
03_01_0217 - 1712979-1713794 25 8.0
01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375... 25 8.0
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 165 bits (400), Expect = 7e-42
Identities = 76/96 (79%), Positives = 86/96 (89%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNAS 188
AEYVVES+GVFTTT+KASAHL GGAKKV+ISAPSADAPMFVVGVN ++YDP V+SNAS
Sbjct: 228 AEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYDPKMNVVSNAS 287
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
CTTNCLAPLAKV+H+ F I++G MT VHATTATQ T
Sbjct: 288 CTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKT 323
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 160 bits (388), Expect = 2e-40
Identities = 74/96 (77%), Positives = 85/96 (88%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNAS 188
AEYVVES+GVFTTT+KASAHL GGA+KV+ISAPSADAPMFVVGVN + Y+PS V+SNAS
Sbjct: 169 AEYVVESSGVFTTTEKASAHLKGGARKVVISAPSADAPMFVVGVNEKNYNPSMNVVSNAS 228
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
CTTNCLAPLAK++H+ F I +G MT VHATTATQ T
Sbjct: 229 CTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQKT 264
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 152 bits (368), Expect = 5e-38
Identities = 72/98 (73%), Positives = 81/98 (82%)
Frame = +3
Query: 3 TRAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISN 182
T AE+VVESTGVFT DKA+AHL GGAKKV+ISAPS DAPMFVVGVN + Y P ++SN
Sbjct: 140 TGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDIDIVSN 199
Query: 183 ASCTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
ASCTTNCLAPLAKVI+D F I++G MT VHA TATQ T
Sbjct: 200 ASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKT 237
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 151 bits (367), Expect = 7e-38
Identities = 72/96 (75%), Positives = 79/96 (82%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNAS 188
AEYVVESTGVFT +KA+AHL GGAKKV+ISAPS DAPMFV GVN + Y ++SNAS
Sbjct: 117 AEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNAS 176
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
CTTNCLAPLAKVIHDNF II+G MT VHA TATQ T
Sbjct: 177 CTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT 212
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 134 bits (325), Expect = 9e-33
Identities = 71/110 (64%), Positives = 79/110 (71%), Gaps = 14/110 (12%)
Frame = +3
Query: 9 AEYVVESTGVFTTTDKASAHLVG--------------GAKKVIISAPSADAPMFVVGVNL 146
AEYVVESTGVFT DKA+AHL G GAKKV+ISAPS DAPMFVVGVN
Sbjct: 99 AEYVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHMQGGAKKVVISAPSKDAPMFVVGVNE 158
Query: 147 EAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQNT 296
+ Y ++SNASCTTNCLAPLAKVI+D F I++G MT VHA TATQ T
Sbjct: 159 KEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKT 208
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 105 bits (251), Expect = 8e-24
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Frame = +3
Query: 12 EYVVESTGVFTTTDKASAHLVGGAKKVIISAPS-ADAPMFVVGVNLEAYDPSYKVISNAS 188
+ V+E TGVF D A H+ GAKKV+I+AP D P +VVGVN + Y P +ISNAS
Sbjct: 159 DLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYSPDEPIISNAS 218
Query: 189 CTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQ 290
CTTNCLAP K++ F II G MT H+ T Q
Sbjct: 219 CTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQ 252
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 93.1 bits (221), Expect = 4e-20
Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Frame = +3
Query: 12 EYVVESTGVFTTTDKASAHLVGGAKKVIISAPS--ADAPMFVVGVNLEAYDPSY-KVISN 182
+ V+E TGVF A H+ GAKKVII+AP+ AD P +V+GVN Y +ISN
Sbjct: 169 DIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVLGVNEGDYSHEVANIISN 228
Query: 183 ASCTTNCLAPLAKVIHDNFEIIDGWMTAVHATTATQ 290
ASCTTNCLAP K++ + F I+ G MT H+ T Q
Sbjct: 229 ASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQ 264
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 151 ASRLTPTTNMGASALGAEMITFLAPPTK*AEALSVVVNTPV 29
+ L TT G + +GA + F++ P+K SVVVN V
Sbjct: 327 SEELIDTTGAGDAFIGAVLYAFVSGPSKFCSVKSVVVNLAV 367
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 180 NASCTTNCLAPLAKVIHDNFEII 248
N SCT NC A + V HD I+
Sbjct: 899 NHSCTPNCYARIMSVGHDESRIV 921
>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
Length = 402
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 296 SVLGGSSGMHCSHPTVNNFKVVVDDL-CEGCEAVSCAGSI 180
SVLGG +G+ S + VV D+ G E V+ GS+
Sbjct: 133 SVLGGGAGLPGSGALAAGVRAVVPDVDATGGEVVAAGGSV 172
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 155 VGFQVDTNYKHGSISTWCGDDYFLGSTHQVSRSFI 51
+GF + + K+ + W G DY + H S SF+
Sbjct: 285 LGFPIRGDVKYSGVIEWNGVDYDGHALHAESLSFV 319
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 LPCL*LVSTWKPTILPTKLFQMLPAQ 195
LPCL + S +P LP +L ++P Q
Sbjct: 551 LPCLQVGSKERPNYLPMELCNIVPGQ 576
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 7 GLNTLLNQPVCSQPLIKLLLTWWV 78
GL + L P CS +LL+ WWV
Sbjct: 564 GLGSCL--PACSTDAAELLIRWWV 585
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 60 SAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVI 227
S VGGA +APS+D + + A P + SNA T A A+V+
Sbjct: 349 SGRHVGGATAAAAAAPSSDGEQKALLETVIANLPEETIKSNAHTGTAVGATTARVL 404
>03_01_0217 - 1712979-1713794
Length = 271
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 287 GGSSGMHCSHPTVNNFKVVVDDLCEGCE 204
GG G HCS P K + C C+
Sbjct: 165 GGEGGEHCSRPAKRRRKCGEEKRCGHCQ 192
>01_05_0153 +
18635495-18636952,18637262-18637333,18637448-18637595,
18637690-18637871
Length = 619
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 204 LAPLAKVIHDNFEIIDGWMTAVHATTA 284
+APL +++H ++++ D M AV TA
Sbjct: 75 VAPLVRLVHSSYKLHDWGMDAVSEYTA 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,599
Number of Sequences: 37544
Number of extensions: 187925
Number of successful extensions: 419
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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