Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C06
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   4.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 149 FQVDTNY--KHGSISTWCGDDYFLGSTHQVSRSFISG 45
           FQV+ ++  K     +W GD + +    +VSR+  +G
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAG 727


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 185 SI*NNFVGRIVGFQVDTNY 129
           S+ NN++  I  +  D NY
Sbjct: 84  SLSNNYISNISNYNNDNNY 102


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 125 VCSWCQPGSLRSFLQSYFKC 184
           +C+ C PG +R   Q  F+C
Sbjct: 405 LCACC-PGRVRRRYQPAFRC 423


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +3

Query: 75  GGAKKVIISAPSADAPMFVVGVNLE 149
           G   KV+       AP+F + V ++
Sbjct: 47  GAVYKVVDQTGPTHAPIFTIAVQID 71


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 156 RRLPG*HQLQTWEHQ 112
           +R  G H  + W HQ
Sbjct: 175 QRTDGKHDYRVWNHQ 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,246
Number of Sequences: 438
Number of extensions: 1654
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)