Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C05
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   244   3e-65
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.3  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    27   3.9  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  244 bits (596), Expect = 3e-65
 Identities = 109/129 (84%), Positives = 115/129 (89%)
 Frame = +2

Query: 17  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 196
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 197 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYG 376
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGAYG
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 377 KPQGTVARV 403
           KPQG VARV
Sbjct: 121 KPQGLVARV 129


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 204 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 299
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 77  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 223
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 381 GFPYAPRIPVWSLSAPA 331
           GFP +P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 405 RTRATVPWGFPY--APRIPVW 349
           +T  TVP GFPY   PRI +W
Sbjct: 292 KTLHTVPRGFPYPDVPRIDIW 312


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 405 RTRATVPWGFPY--APRIPVW 349
           +T  TVP GFPY   PRI +W
Sbjct: 292 KTLHTVPRGFPYPDVPRIDIW 312


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -1

Query: 224 YGLLPAPQNSA--ARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPDKTEI*DTVYSY 51
           Y L P PQ S     +H     +   S  LS  +CPSR   +     P       TV++Y
Sbjct: 233 YSLYPPPQPSQQFVHSHNFHQPKFDASSMLSTGYCPSRNVATFKVDKPY-----GTVFTY 287

Query: 50  NIDN 39
           +  N
Sbjct: 288 DHQN 291


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 302 HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQN 198
           HG G      GT   R  +  +CCN +G L  P N
Sbjct: 183 HGIGAFGGNKGTGYGR--VPSSCCNEHGKLSYPNN 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,359,180
Number of Sequences: 27780
Number of extensions: 218580
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)