Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C04
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.0  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    23   6.1  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    23   6.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    23   6.1  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 127 NKNNDFILYLLTVTVEFVASSGRGSARVFLCR 32
           N  N+FI YLL   ++ V+S  +   +  + R
Sbjct: 585 NSKNEFITYLLDFYMQLVSSQNKNPRKTAISR 616


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 27  EHRQRKTRADPLPLEATNSTVTVKRYKMK 113
           ++ +++ R++P+P+E   STV   + K K
Sbjct: 557 DNSEKEDRSNPIPVEKRASTVLNTKKKRK 585


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 21 RPEHRQRKTRADPLPLEATN 80
          RPEHR+RK R+     E  N
Sbjct: 8  RPEHRKRKARSATSKREKEN 27


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 154 DNTKQHNAANKNNDFILYLLTVTVEFVASSGRGSA 50
           +  KQH     N D + YL+T      AS G G+A
Sbjct: 294 ETIKQHKIPAINEDGLFYLIT---HLPASGGTGAA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,483
Number of Sequences: 5004
Number of extensions: 6744
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)