Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C04
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0055 + 16891212-16891848,16893166-16893206                       27   1.6  
04_04_0866 + 28859512-28859961                                         27   2.8  
11_08_0103 + 28372357-28372771,28374025-28374197                       26   3.7  
01_01_1110 + 8789741-8790616                                           26   3.7  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     25   6.5  
07_03_0794 + 21562995-21563004,21564151-21565799                       25   6.5  
03_05_0206 + 21975077-21975673,21975733-21975831                       25   6.5  
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911...    25   8.7  

>03_04_0055 + 16891212-16891848,16893166-16893206
          Length = 225

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  GGSSSARGHELDGDSQKIQDE 112
           GGSSS+ GH+ D D  + +DE
Sbjct: 204 GGSSSSSGHDEDEDEDEDEDE 224


>04_04_0866 + 28859512-28859961
          Length = 149

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 82  EFVASSGRGSARVFLCRCSGRYGR 11
           E  AS+G G+A   LCR  G  GR
Sbjct: 87  EEAASTGEGAAATLLCRGGGSRGR 110


>11_08_0103 + 28372357-28372771,28374025-28374197
          Length = 195

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 82  EFVASSGRGSARVFLCRCSGRYGR 11
           E VAS G G+A   LCR  G  GR
Sbjct: 43  EEVASIGEGAAATLLCRGEGFRGR 66


>01_01_1110 + 8789741-8790616
          Length = 291

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  AIPS*TPTEKDAGGSSSARGHELDGDSQKIQ 106
           ++PS  P    A  SSS+RGH L  D+  ++
Sbjct: 4   SVPSTPPAISRADPSSSSRGHSLPTDADSMR 34


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 57  DPPASFSVGVQDGMAEPSC 1
           DPPA    G  D +A PSC
Sbjct: 84  DPPAGAGAGEDDAVACPSC 102


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   TRARPYRPEHRQRKTRADP 59
           T +  +RPE RQR+ R DP
Sbjct: 160 TASYEFRPEKRQRELREDP 178


>03_05_0206 + 21975077-21975673,21975733-21975831
          Length = 231

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 DTR*SRCFCWRHCAA*CCQRMLVLSLGLRRMR 195
           DT+  RCF WR+  A    R  V++L L+  R
Sbjct: 196 DTKKVRCFQWRYGVADDVARTRVIALPLQACR 227


>07_03_0872 -
           22190468-22190575,22190652-22190910,22191005-22191108,
           22191245-22191423,22191565-22191670,22191797-22191940,
           22192024-22192179,22192274-22192378,22192483-22192545,
           22192993-22192995
          Length = 408

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 151 NTKQHNAANKNNDFILYLLTVTVEFVASSGRGSARVF--LCRCSGRYGRA 8
           NT+  N A +   F L    V V  VASSGRG    F  LC  +  +G A
Sbjct: 88  NTRMRNLA-RYMLFFLSSFGVIVLDVASSGRGGIAPFVGLCLIAAAFGVA 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,390,785
Number of Sequences: 37544
Number of extensions: 50773
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)