Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C04
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    27   1.9  
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    27   1.9  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    27   2.5  
AC024791-8|AAF60652.1|  230|Caenorhabditis elegans Hypothetical ...    25   7.7  

>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 187 SSDRAKGLAYADNTKQHNAANKNNDFILYLLTV 89
           + D  +    A   + HNA +KNN  ++Y LTV
Sbjct: 70  TEDGPRDAVRALKKRLHNAMSKNNAVVMYTLTV 102


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 187 SSDRAKGLAYADNTKQHNAANKNNDFILYLLTV 89
           + D  +    A   + HNA +KNN  ++Y LTV
Sbjct: 70  TEDGPRDAVRALKKRLHNAMSKNNAVVMYTLTV 102


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 2    HEGSAIPS*TPTEKDAGGSSSARGH 76
            H   A PS TP+E D GGSS   GH
Sbjct: 3162 HRYVACPSITPSEGDDGGSSET-GH 3185


>AC024791-8|AAF60652.1|  230|Caenorhabditis elegans Hypothetical
           protein Y47G6A.9 protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PEHRQRKTRADPLPLEATNSTVTVKRYKMK 113
           P     K + DP+PLE T   + V R K++
Sbjct: 48  PPQLYPKVQHDPVPLEMTTDMLYVSRLKVE 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,456
Number of Sequences: 27780
Number of extensions: 38508
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)