Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C03
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 89 9e-19
06_01_0671 - 4899611-4899829,4900870-4901448 51 2e-07
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 47 4e-06
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 46 6e-06
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 1.3
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 27 2.3
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 27 2.3
08_01_0910 + 8968896-8968932,8969111-8969181,8970417-8970740,897... 27 3.1
10_01_0245 + 2566400-2567584 27 4.1
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 27 4.1
03_04_0078 - 17093767-17093828,17094270-17094699,17095837-170959... 27 4.1
07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158 26 5.4
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 26 5.4
01_01_0381 - 2961422-2963917 26 5.4
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 26 7.1
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 26 7.1
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 26 7.1
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 25 9.4
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 25 9.4
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 88.6 bits (210), Expect = 9e-19
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +3
Query: 90 APQFKTTAVVNGEFKDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGC 266
AP F AV + EF +V LSD+ GK YV+LFFYPLDFTFVCPTEI AFS+R D+F K+
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 267 EVIAGSTDS 293
E++ S DS
Sbjct: 134 EILGVSIDS 142
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +3
Query: 138 VALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHFTH 305
V+LS FKG+ VV++FYP D T C + AF + + F+K G EVI S D +H
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASH 192
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 5 EAPGCVV-FCSFRTNYHKFQQ 64
E PGC C+FR +Y KF++
Sbjct: 156 ETPGCTKQACAFRDSYEKFKK 176
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 46.8 bits (106), Expect = 4e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 138 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHFTHLAW 314
+ + DF G YV+LF +P DFT VC TE+ A + A +F K G +++ S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 138 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHFTHLAW 314
+ L DF G YV++F +P DFT VC TE+ + A +F K G +++ S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -2
Query: 296 VRVRGAGDHLAPDLTEVISSLRESDYLCRAY---EREIKRIEE*HDVFPLKIREGDVFEL 126
VR RGAG H+ P + + CR Y + I E +F L++ D+ EL
Sbjct: 123 VRSRGAGVHVVPTFAASVYQVTPVTVFCRIYLCITPQFPMIYE-SCLFKLQLESKDLAEL 181
Query: 125 SVDD 114
S+ +
Sbjct: 182 SIGE 185
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = -2
Query: 314 PSQVGEVR--VRGAGDHLAPDLTEVISSLRESDYLCRAYE---REIK--RIEE*HDVFPL 156
P+ G ++ V+ +L L VIS++R + C A+E ++K R+EE V +
Sbjct: 458 PATTGRLKRIVKSKNSYLERHLGHVISTIRSAIANCDAFESIAEQLKKGRLEE-LAVANM 516
Query: 155 KIREGDVFELSVDDG 111
K +GD + DDG
Sbjct: 517 KSNDGDTEMVPADDG 531
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFR-KIGCEVI 275
++N + K V DF GK+ +L+F +CP E+ + D + K EV+
Sbjct: 187 LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAKMEVV 241
>08_01_0910 +
8968896-8968932,8969111-8969181,8970417-8970740,
8972878-8972934,8974578-8974641,8974749-8974810
Length = 204
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 149 REGDVFELSVDDGCRLELWSW 87
R+G+ + DDGC L LW W
Sbjct: 103 RKGNTDFVMDDDGCGLPLWPW 123
>10_01_0245 + 2566400-2567584
Length = 394
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 185 IEE*HD-VFPLKIREGDVFELSVDDGCRLELWSWL 84
I E HD ++P+ ++EG L V +++W W+
Sbjct: 261 IHEDHDGLYPITLQEGTELGLIVMSRSCMQIWQWM 295
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 277 AITSHPILRKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSERATS-LNSPLTTAVVL 101
+IT+ P+L + A + +G + + + T + L A S SPL + VL
Sbjct: 6 SITAFPVLARILAELKLLTTDIGRMAMSAAAVNDITAWVLLALAIALSGSGSPLVSIYVL 65
Query: 100 NCGAGLVSCRGILLKFMIV 44
CG V + ++ ++V
Sbjct: 66 LCGVAFVGFATVAVRPVLV 84
>03_04_0078 -
17093767-17093828,17094270-17094699,17095837-17095972,
17096081-17096265
Length = 270
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 314 PSQVGEVRVRGAGDHLAPDLTEVISSLRESDYLCRAY 204
P + E+R+ + D +A DL E IS + E R Y
Sbjct: 11 PKKNNEIRMFESSDEMATDLAEYISQVSEISIKERGY 47
>07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158
Length = 280
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 314 PSQVGEVRVRGAGDHLAPDLTEVISSLRESDYLCRAY 204
P + E+R+ + D ++ DL E IS + E R Y
Sbjct: 11 PKRNNEIRIFESSDEMSTDLAEYISQVSEISVKERGY 47
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 301 VKCESVEPAITSHPILRKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSERATSLNSP 122
++C V+PA+T+ + KS S A S T + S K+ Y P + LN
Sbjct: 484 IRCNKVKPAMTNGKTVGKSQGASRVA-SSTRSTKITSS--KHENMYLPRRIRSIVFLNYS 540
Query: 121 L 119
L
Sbjct: 541 L 541
>01_01_0381 - 2961422-2963917
Length = 831
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 253 RKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSER 143
R++SARSE+ + T+ + N + YFP+++ R
Sbjct: 702 RRNSARSEEECTTTTTTSTSTDTDGNYSVYFPVQASR 738
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 155 KIREGDVFELSVDDGCRLELWSWLSQLQRHSVEI 54
K EG+V + + +G LE +SW+ QL ++ +
Sbjct: 131 KKEEGNVRKPNAGNGLDLEKYSWIQQLPEVTITV 164
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 290 VRGAGDHLAPDLTEVISSLR 231
V G GDH PDL + IS L+
Sbjct: 251 VAGGGDHGDPDLEQAISDLQ 270
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 129 FKDVALSD-FKGKYVVLFFYPLDFTFVC-PTEIIAFSERADDFRKIGCE-VIAGSTDSHF 299
F L D F GK VV+F P +T VC + ++ D + G + VI S + +
Sbjct: 59 FSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPY 118
Query: 300 THLAW 314
W
Sbjct: 119 ALNGW 123
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 296 VRVRGAGDHLAPDLTEVISSLRESDYLCRAYEREI 192
++ GD A DL E++ L +D LC ++ +
Sbjct: 300 IKRANGGDSRAEDLREILGDLHLNDDLCNKLQKSM 334
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 259 ILRKSSARSEKAIISVGH-TNVKSRG*KNSTTYFPLKSERATSLNSPLTTAVVLNCGAG 86
+ R + R K + ++ T + T Y L + SLN+PL ++ V+N G
Sbjct: 1456 VARAAGLRQRKQVFTISSGTGSGTMSELTDTQYTELVDDVIDSLNAPLPSSAVINTKKG 1514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,662,700
Number of Sequences: 37544
Number of extensions: 125197
Number of successful extensions: 405
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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