Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C03
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   133   2e-32
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   119   5e-28
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    47   2e-06
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    29   0.53 
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    27   2.8  
Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine tr...    27   3.8  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    25   8.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    25   8.7  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  133 bits (322), Expect = 2e-32
 Identities = 60/77 (77%), Positives = 69/77 (89%)
 Frame = +3

Query: 84  KPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIG 263
           KPAPQFKT AVV+GEF DV+LSD+KGKYVVLFFYPLDFTFVCPTEIIAFS+RA++F+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 264 CEVIAGSTDSHFTHLAW 314
             V+A STDS F+HLAW
Sbjct: 68  TVVLAASTDSVFSHLAW 84


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  119 bits (286), Expect = 5e-28
 Identities = 51/82 (62%), Positives = 66/82 (80%)
 Frame = +3

Query: 69  PLQLTKPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADD 248
           PL      P FK TAVV+G+FK ++  D+KGK++V+FFYPLDFTFVCPTEIIA+ +RA++
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 249 FRKIGCEVIAGSTDSHFTHLAW 314
           FR +G EV+A S DSHF+HLAW
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAW 113


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 132 KDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHFTHL 308
           K+  L ++ G+ +++LF +P DFT VC TE+    + A +FRK   +++A S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 309 AW 314
            W
Sbjct: 78  DW 79


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 290 VRGAGDHLAPDLTEVISSLRESDYLCRAYEREIKRIEE 177
           V  A DH+  ++ E++  L +   + R +ER I+ +EE
Sbjct: 555 VSAASDHVPQNMDELLEDLMKMKAVLRQHERRIRMLEE 592


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  FEQTIINFNRMPLQLTKPAPQFKTTAVVNGEFKDVA 143
           F+   I FN  P+ +TKPA + +   V+  +  D+A
Sbjct: 114 FKAAPIRFNAPPVPITKPAKKEENRHVITSKDDDIA 149


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 114 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 278
           V N    DV+LSD+KGK V++         +         E  D ++K G EV+A
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62


>Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 299 EVRVRGAGDHLAPDLTEVISSLRESDYLCRAYEREIK 189
           E+R+R   D L  +L  + +SLR+ D   R+    IK
Sbjct: 133 EMRIREHNDRLCHNLATLFNSLRDKDRALRSKGEPIK 169


>Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 299 EVRVRGAGDHLAPDLTEVISSLRESDYLCRAYEREIK 189
           E+R+R   D L  +L  + +SLR+ D   R+    IK
Sbjct: 133 EMRIREHNDRLCHNLATLFNSLRDKDRALRSKGEPIK 169


>U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine
           transglycosylase protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 299 EVRVRGAGDHLAPDLTEVISSLRESDYLCRAYEREIK 189
           E+R+R   D L  +L  + +SLR+ D   R+    IK
Sbjct: 133 EMRIREHNDRLCHNLATLFNSLRDKDRALRSKGEPIK 169


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 254 TEVISSLRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDGCR 105
           TE++   R S    R    ++KR+   H  F +     + F +S+D+G R
Sbjct: 604 TEIVKKTRGSGSTKRRRVVKVKRVPYRHPAFRVFSTTNEKFAMSMDEGER 653


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 230 ESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDGCRLELWSWLSQLQRHSVEIY 51
           E++YLCR   R++ R+E        K +   V      DG R  +  W+S+ ++  VE+ 
Sbjct: 90  ENNYLCRTDPRDVARVES-KTWMVTKDKYDSV--CHTPDGVRPIMGQWMSE-EQFGVEL- 144

Query: 50  DSLF 39
           DS F
Sbjct: 145 DSRF 148


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 230 ESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDGCRLELWSWLSQLQRHSVEIY 51
           E++YLCR   R++ R+E        K +   V      DG R  +  W+S+ ++  VE+ 
Sbjct: 90  ENNYLCRTDPRDVARVES-KTWMVTKDKYDSV--CHTPDGVRPIMGQWMSE-EQFGVEL- 144

Query: 50  DSLF 39
           DS F
Sbjct: 145 DSRF 148


>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 36  FEQTIINFNRMPLQLTKPAPQFKTTAVVNGEFKDVALSDFK 158
           F++  I + R  +  T  A  F    + NG +  +A +DFK
Sbjct: 69  FDELCIFYRRSNVGCTLKAYNFSEKTIKNGHYLKLASTDFK 109


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 186  PLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHF 299
            P +FT VC TE     + A  FR    E I    D HF
Sbjct: 2180 PTEFTTVCVTEDKLLIQGAYGFRAAKEESITLDADLHF 2217


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 186  PLDFTFVCPTEIIAFSERADDFRKIGCEVIAGSTDSHF 299
            P +FT VC TE     + A  FR    E I    D HF
Sbjct: 7026 PTEFTTVCVTEDKLLIQGAYGFRAAKEESITLDADLHF 7063


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,689
Number of Sequences: 27780
Number of extensions: 105340
Number of successful extensions: 364
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)