Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C02
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 90 6e-20
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 73 1e-14
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 34 0.005
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 26 1.4
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 1.4
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 26 1.4
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 3.1
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 3.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 24 4.2
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 24 4.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 4.2
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 5.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 5.5
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 24 5.5
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 24 5.5
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 7.3
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 23 7.3
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 23 7.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 7.3
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 23 7.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 23 7.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 23 9.6
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 23 9.6
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 90.2 bits (214), Expect = 6e-20
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = +1
Query: 109 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAI 288
P+Y PFFGVMG +AI+F+S GAAYGTAK+ +GI AM V+ + I+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 289 YGL 297
YGL
Sbjct: 67 YGL 69
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 72.5 bits (170), Expect = 1e-14
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = +1
Query: 109 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAI 288
PIY FFG G ++++FS LGA YGTA + GI A+ E +MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 289 YGL 297
YGL
Sbjct: 67 YGL 69
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 33.9 bits (74), Expect = 0.005
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 127 FGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
+G++G AS + F +GAA+G I+ V K++I ++ ++AIY L
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSL 101
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 1.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 83 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSHASVLSP 217
HI WP+ QS D E G L + A + + + + +L+P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 112 LDFRPFFLNVGVFTGPKNSDDYLPR 38
+DF P V TGP N+DDY+ R
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHR 380
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 243 DLLKKHHRHGDNTDA*LGCAICSTKGAEDD 154
+LL ++ GDNT G A+C+ +G E +
Sbjct: 196 ELLSEYGFDGDNTPIVSGSALCALEGREPE 225
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 51 SSEFLGPVNTPTFKKNG 101
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 47 IVIRVFGTCKYSHIQEKWPK 106
I + F + SH+QEKW K
Sbjct: 105 ITVMGFAMLRVSHLQEKWRK 124
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 73 TGPKNSDDYLPRAEFMQPGDPLV 5
TGPK+ + + RA+F + DPLV
Sbjct: 334 TGPKHINMEISRAQFEKLVDPLV 356
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 24.2 bits (50), Expect = 4.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 252 HHSRCHGGYH 281
HHS+ HG YH
Sbjct: 78 HHSKLHGSYH 87
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 77 YSHIQEKWPKIQSMDLSLELWG 142
+ ++QE W K++ +DL+ L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 75 NTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQV 197
++PT + + W S+G VC H++ CC ++S++
Sbjct: 32 DSPTTVHHDERKESWR---SHGFIVCLHIRCCICCKYNSKI 69
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 285 GNDTRHDNGNDGFHDLLK 232
GN +D N+G HD+L+
Sbjct: 925 GNMDNNDRDNEGIHDILQ 942
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 23.8 bits (49), Expect = 5.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 63 LGPVNTPTFKKNGRKSNLWTFLWSYGGGVCHHLQ 164
L PV+ TFKK+G+ + +++GG CH L+
Sbjct: 61 LPPVDVLTFKKSGK-----PYYFAFGG--CHRLR 87
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 231 KHHRHGDNTDA*LGCAICSTKGAE---DDGRRRPHN 133
K++ G+N DA G I T+G++ DGR+ P N
Sbjct: 92 KYNALGNNLDAVRGKVISPTQGSDARGPDGRQVPLN 127
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/51 (29%), Positives = 18/51 (35%)
Frame = -2
Query: 282 NDTRHDNGNDGFHDLLKKHHRHGDNTDA*LGCAICSTKGAEDDGRRRPHNS 130
ND R + F +L K H H D G + DG RR S
Sbjct: 79 NDNRPVSHTHTFVELQKSHQNHLTENDRNFGTSRLDDVAPNADGVRRLRTS 129
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 154 IIFSSLGAAYGTAKSCIGIVAM---PVMLFEQIMKSIIPVVMAGII 282
I F +GA YGTA I IV + +M +++ + GII
Sbjct: 334 IFFRVIGAIYGTALILITIVCIVGNTIMAIQKLKSETSSKNLVGII 379
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 154 IIFSSLGAAYGTAKSCIGIVAM---PVMLFEQIMKSIIPVVMAGII 282
I F +GA YGTA I IV + +M +++ + GII
Sbjct: 334 IFFRVIGAIYGTALILITIVCIVGNTIMAIQKLKSETSSKNLVGII 379
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 97 FFLNVGVFTGPKNSDDY 47
F N+G+ +GPK D Y
Sbjct: 24 FLKNIGIISGPKLVDTY 40
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 83 HIQEKWPKIQSMDLSLELWGRRLPS 157
H KW S D ++++W R PS
Sbjct: 92 HCDGKWLATSSEDGTVKVWDMRAPS 116
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 191 AVPYAAPRELKMMADAAPITPKKGP 117
++P +AP L M A AAP P P
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 146 RLPSSSAPLVLHMAQPSHASVLSP 217
R+PS SAP + PS+ +V SP
Sbjct: 244 RVPSLSAPAPPPIPPPSNGTVSSP 267
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 147 VCHHLQLPWCCIWHSQVMH 203
V HL L W C+W +Q H
Sbjct: 71 VAPHL-LKWTCVWPNQSSH 88
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 154 IIFSSLGAAYGTAKSCIGIVAM---PVMLFEQIMKSIIPVVMAGII 282
I F +GA YGTA I IV + +M +++ + GII
Sbjct: 334 IFFRVIGAIYGTALILITIVCIVGNTIMAIQKLKSETSSKNLVGII 379
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 291 VDGNDTRHDNGNDGFHDLLKKHHRHGDNTDA 199
+ GN T ++ ND + HRH ++D+
Sbjct: 397 IQGNRTIQESNNDRDESTVASIHRHNFDSDS 427
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 154 IIFSSLGAAYGTAKSCIGIVAM---PVMLFEQIMKSIIPVVMAGII 282
I F +GA YGTA I IV + +M +++ + GII
Sbjct: 334 IFFRVIGAIYGTALILITIVCIVGNTIMAIQKLKSETSSKNLVGII 379
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 125 SLELWGRRLPSSSAPLVLHM 184
+ E+W + P+ P +LHM
Sbjct: 608 NFEVWAAQKPTIEPPTILHM 627
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 252 HHSRCHGGY 278
H SRCHG Y
Sbjct: 19 HRSRCHGAY 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,657
Number of Sequences: 5004
Number of extensions: 32917
Number of successful extensions: 95
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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