Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C02
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 88 1e-18
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 88 1e-18
05_01_0043 - 295041-295173,296252-296537,296616-296697 88 1e-18
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 87 3e-18
01_07_0267 + 42410174-42410252,42410679-42411097 81 1e-16
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 31 0.16
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 31 0.16
01_01_0596 + 4435643-4436664,4437241-4437766 28 1.1
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 28 1.5
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 2.0
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 2.0
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 27 2.6
10_08_0401 + 17629912-17630376 27 2.6
08_01_0842 - 8252232-8253155 27 2.6
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 27 3.5
02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364... 26 4.6
08_02_0707 - 20212190-20214592 22 6.7
11_06_0661 - 26009838-26010950,26011302-26011802 25 8.0
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 25 8.0
02_04_0572 + 23972319-23973683 25 8.0
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 88.2 bits (209), Expect = 1e-18
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = +1
Query: 121 PFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
PFFG +GAASA+IFS +GAAYGTAKS +G+ +M VM E +MKSI+PVVMAG++ IYGL
Sbjct: 12 PFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGL 70
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = +1
Query: 121 PFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
PFFG +GAASA++FS +GAAYGTAKS +G+ +M VM E +MKSI+PVVMAG++ IYGL
Sbjct: 12 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGL 70
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = +1
Query: 121 PFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
PFFG +GAASA++FS +GAAYGTAKS +G+ +M VM E +MKSI+PVVMAG++ IYGL
Sbjct: 13 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGL 71
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +1
Query: 121 PFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
PFFG +GAA+A++FS +GAAYGTAKS +G+ +M VM E +MKSI+PVVMAG++ IYGL
Sbjct: 14 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGL 72
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 81.4 bits (192), Expect = 1e-16
Identities = 36/61 (59%), Positives = 48/61 (78%)
Frame = +1
Query: 115 YGPFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYG 294
+ PF G +GAA A++FS +GAAYGTA+S +G+ M VM E +MKSI+PVVMAG++ IYG
Sbjct: 10 FAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVLGIYG 69
Query: 295 L 297
L
Sbjct: 70 L 70
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 98 WPKIQ-SMDLSLELWGRRLPSSSAPLVLHMAQPSHASVLSPCR*CFLSRS*NPSFPLSWR 274
WP ++ S D LEL RRLPS++ PL P+ S+ R R + + PL
Sbjct: 126 WPSVKWSSDCLLELQHRRLPSTAPPLT-----PTLGSICMASRCALRRRPHSVAGPLRSA 180
Query: 275 VSLPSTD 295
S P+ D
Sbjct: 181 PSSPAVD 187
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 127 FGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGIIAIYGL 297
F +G A +I S LGAA+G + ++ + K++I V+ +AIYG+
Sbjct: 20 FSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGV 76
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 258 NDGFHDLLKKHHRHGDNTDA*LGCAICSTKGAEDDGRRRPHNSKERSIDWIFGHFS*MWE 79
ND +H+L+ H+HG L C + S G D R S ++ + WI + WE
Sbjct: 210 NDPYHNLIHYPHQHGK-----LNCLVESPAG---DLMRVKRQSNDKFVVWILDKGTFSWE 261
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 126 ERSIDWIFGHFS*MWEYLQVPKTLMTICLVPNSC 25
E S+D+IFG+ ++E K L++ L P SC
Sbjct: 256 EGSVDFIFGNALSLYEGYSRGKPLLSATLAPRSC 289
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 201 HRYCRHAGDAF*ADHEIHHSRCHGGYHCH 287
H Y RH GD F EI R GG+H H
Sbjct: 134 HHYHRHGGDDFLPADEIR--RVGGGHHHH 160
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 236 SKSITGMATIPMHDLAVPYAAPRELKMMADAAP 138
SKS+ GM ++P + + P ++PR LK D +P
Sbjct: 493 SKSLIGMLSLPQRNASSPRSSPR-LKGRIDLSP 524
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 109 PIY--GPFFGVMGAASAIIFSSLGAAYGTAK 195
PI+ G FG+MGA F S GA + TA+
Sbjct: 285 PIFTAGHSFGMMGAVLVSAFESTGAHFATAR 315
>10_08_0401 + 17629912-17630376
Length = 154
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 133 VMGAASAIIFSSLGAAYGTAKSCIGIVA 216
V GAA+ F++L AY A+ +G+ A
Sbjct: 111 VAGAAAVAAFAALAVAYAVARRRVGVAA 138
>08_01_0842 - 8252232-8253155
Length = 307
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 201 HRYCRHAGDAF*ADHEIHHSRCHGGYHC 284
H C AGD H H+ HGG HC
Sbjct: 191 HPPCAAAGDGH--GHGAGHAHAHGGCHC 216
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = -2
Query: 183 ICSTKGAEDDGRRRP---HNSKERSIDWIF 103
+CSTKG E R P SKE DW+F
Sbjct: 175 VCSTKGVEVKDRFHPFLLDASKETFPDWLF 204
>02_05_0609 -
30335054-30335374,30335491-30335870,30336102-30336443,
30336551-30336700,30336781-30336878,30336986-30337045,
30337140-30337211,30337337-30337480,30337584-30337655,
30337767-30337899,30338076-30338181
Length = 625
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 97 MAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPV 225
++ N + GP G + I+ + L A GT C G + MP+
Sbjct: 178 LSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPM 220
>08_02_0707 - 20212190-20214592
Length = 800
Score = 22.2 bits (45), Expect(2) = 6.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 210 CRHAGDAF*ADHEIHH 257
C H GDA + H HH
Sbjct: 540 CEHHGDANKSHHHDHH 555
Score = 21.8 bits (44), Expect(2) = 6.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 252 HHSRCHGGYHCH 287
+HS CHG H H
Sbjct: 576 NHSHCHGHDHHH 587
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 81 PTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQVM 200
P F+K K +L + + G + HHL P S VM
Sbjct: 273 PPFRKEKEKEHLLVYEYMENGSLDHHLHGPTSSSSSSPVM 312
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 236 SKSITGMATIPMHDLAVPYAAPRELKMMADAAP 138
S ++TG +P+ + AVP+A K D P
Sbjct: 1019 STALTGCGRLPICEWAVPWAKQSRFKAAKDLRP 1051
>02_04_0572 + 23972319-23973683
Length = 454
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 101 PKIQSMDLSLELWGRRLPSSSAPL 172
PK++ +DLS +G ++PSS A L
Sbjct: 413 PKLRQLDLSHNNFGGKIPSSLANL 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,047
Number of Sequences: 37544
Number of extensions: 256267
Number of successful extensions: 615
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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